/home66/gary/public_html/cloudy/c10_branch/source/iso.h File Reference

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Data Structures

struct  t_iso

Defines

#define HE1CSARRAY   10
#define KILL_BELOW_PLASMA(E_)   ( (rfield.lgPlasNu && ((E_)<rfield.plsfrq) ) ? 0.:1. )
#define NUM_DR_TEMPS   19
#define N_(A_)   (StatesElemNEW[nelem][nelem-ipISO][A_].n)
#define L_(A_)   (StatesElemNEW[nelem][nelem-ipISO][A_].l)
#define S_(A_)   (StatesElemNEW[nelem][nelem-ipISO][A_].S)
#define J_(A_)   (StatesElemNEW[nelem][nelem-ipISO][A_].j)
#define IPRAD   0
#define IPCOLLIS   1
#define RREC_MAXN   40
#define LIKE_RREC_MAXN(A_)   ( A_ == ipHELIUM ? 40 : 20 )
#define N_ISO_TE_RECOMB   41
#define SumUpToThisN   1000
#define RECOMBMAGIC   (90521)

Functions

void iso_cascade (long ipISO, long nelem)
void iso_charge_transfer_update (void)
void iso_collapsed_bnl_print (long ipISO, long nelem)
void iso_collapsed_bnl_set (long ipISO, long nelem)
void iso_collapsed_Aul_update (long ipISO, long nelem)
void iso_collapsed_lifetimes_update (long ipISO, long nelem)
void iso_collide (long ipISO, long nelem)
void iso_collisional_ionization (long ipISO, long nelem)
void iso_continuum_lower (long ipISO, long nelem)
void iso_cool (long ipISO, long nelem)
void iso_create (void)
double iso_cross_section (double ERyd, double EthRyd, long n, long l, long S, long globalZ, long globalISO)
void iso_departure_coefficients (long ipISO, long nelem)
double iso_dielec_recomb_rate (long ipISO, long nelem, long ipLo)
void iso_drive (void)
void iso_error_generation (long ipISO, long nelem)
long iso_get_total_num_levels (long ipISO, long nmaxResolved, long numCollapsed)
void IonHydro (void)
void iso_ionize_recombine (long ipISO, long nelem)
void iso_level (const long ipISO, const long nelem)
void iso_photo (long ipISO, long nelem)
void iso_prt_pops (long ipISO, long nelem, bool lgPrtDeparCoef)
void iso_put_error (long ipISO, long nelem, long ipHi, long ipLo, long whichData, realnum errorOpt, realnum errorPess)
void iso_radiative_recomb (long ipISO, long nelem)
void iso_radiative_recomb_effective (long ipISO, long nelem)
double iso_recomb_check (long ipISO, long nelem, long level, double temperature)
void iso_recomb_auxiliary_free (void)
void iso_recomb_malloc (void)
void iso_recomb_setup (long ipISO)
double iso_RRCoef_Te (long ipISO, long nelem, long n)
void iso_satellite_update (void)
double iso_state_lifetime (long ipISO, long nelem, long n, long l)
void iso_solve (long ipISO, long nelem)
void iso_suprathermal (long ipISO, long nelem)
void iso_update_num_levels (long ipISO, long nelem)
void iso_update_rates (long ipISO, long nelem)

Variables

EXTERN long int max_num_levels
EXTERN struct t_iso iso

Detailed Description

Definition in file iso.h.


Define Documentation

#define HE1CSARRAY   10

temperatures at which CS for He1 are stored

Definition at line 12 of file iso.h.

Referenced by HeCollidSetup().

#define IPCOLLIS   1

Definition at line 27 of file iso.h.

Referenced by iso_collide(), iso_collisional_ionization(), and iso_level().

#define IPRAD   0
#define J_ ( A_   )     (StatesElemNEW[nelem][nelem-ipISO][A_].j)

Definition at line 24 of file iso.h.

Referenced by DGEMM(), DGER(), DGETF2(), DGETRF(), and DTRSM().

#define KILL_BELOW_PLASMA ( E_   )     ( (rfield.lgPlasNu && ((E_)<rfield.plsfrq) ) ? 0.:1. )

This macro is used to zero any radiative process with photon energy below the plasma frequency. The energy must be in Rydbergs!

Definition at line 16 of file iso.h.

Referenced by iso_level().

#define L_ ( A_   )     (StatesElemNEW[nelem][nelem-ipISO][A_].l)
#define LIKE_RREC_MAXN ( A_   )     ( A_ == ipHELIUM ? 40 : 20 )

Ions of the sequences will go up to this n, h-like He will get same as iso roots.

Definition at line 38 of file iso.h.

Referenced by iso_recomb_malloc(), iso_recomb_setup(), and ParseCompile().

#define N_ ( A_   )     (StatesElemNEW[nelem][nelem-ipISO][A_].n)
#define N_ISO_TE_RECOMB   41

Definition at line 40 of file iso.h.

Referenced by iso_recomb_malloc(), iso_recomb_setup(), and iso_RRCoef_Te().

#define NUM_DR_TEMPS   19

Definition at line 18 of file iso.h.

Referenced by iso_allocate(), and iso_dielec_recomb_rate().

#define RECOMBMAGIC   (90521)

the magic number for the table of recombination coefficients, YYMMDD

Definition at line 46 of file iso.h.

Referenced by iso_recomb_setup().

#define RREC_MAXN   40

this is the number of levels used with the atom xx-like levels large command

Definition at line 35 of file iso.h.

Referenced by iso_recomb_malloc(), iso_recomb_setup(), ParseAtomISO(), and ParseCompile().

#define S_ ( A_   )     (StatesElemNEW[nelem][nelem-ipISO][A_].S)
#define SumUpToThisN   1000

This is the n to go up to when calculating total recombination. Any change here will not be reflected in total recomb until "compile xxlike" is run

Definition at line 44 of file iso.h.

Referenced by iso_radiative_recomb(), and iso_recomb_setup().


Function Documentation

void IonHydro ( void   ) 
void iso_cascade ( long  ipISO,
long  nelem 
)

iso_cascade - calculate cascade probabilities, branching ratios, and associated errors

Parameters:
ipISO 
nelem 

Cascade probabilities are as defined in Robbins 68, generalized here for cascade probability for any iso sequence. >>refer He triplets Robbins, R.R. 1968, ApJ 151, 497R >>refer He triplets Robbins, R.R. 1968a, ApJ 151, 511R

Definition at line 1242 of file iso_create.cpp.

References ASSERT, t_iso::BranchRatio, t_iso::CascadeProb, DEBUG_ENTRY, t_iso::Error, ioQQQ, ipH_LIKE, ipHe2p3P0, ipHe2p3P1, ipHe2p3P2, ipHE_LIKE, ipHELIUM, IPRAD, iso, L_, t_opac::lgCaseB, t_iso::lgRandErrGen, MALLOC, N_, t_iso::n_HighestResolved_max, t_iso::nCollapsed_max, t_iso::numLevels_max, opac, pow(), S, S_, t_iso::SigmaAtot, t_iso::SigmaCascadeProb, t_iso::SmallA, StatesElemNEW, and Transitions.

Referenced by iso_create(), and iso_update_rates().

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void iso_charge_transfer_update ( void   ) 
void iso_collapsed_Aul_update ( long  ipISO,
long  nelem 
)

iso_collapsed_Aul_update - update decays from collapsed levels

Parameters:
ipISO 
nelem 

Definition at line 1908 of file iso_create.cpp.

References ASSERT, t_iso::bnl_effective, t_iso::CachedAs, DEBUG_ENTRY, ipH_LIKE, ipHE_LIKE, iso, L_, t_iso::n_HighestResolved_max, t_iso::nCollapsed_max, t_iso::numLevels_max, t_iso::QuantumNumbers2Index, StatesElemNEW, TotalInsanity(), and Transitions.

Referenced by iso_update_rates(), and iso_zero().

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void iso_collapsed_bnl_print ( long  ipISO,
long  nelem 
)

iso_collapsed_bnl_print - print departure coefficients for collapsed levels

Parameters:
ipISO 
nelem 

Definition at line 1862 of file iso_create.cpp.

References t_iso::bnl_effective, t_elementnames::chElementSym, t_iso::chISO, DEBUG_ENTRY, elementnames, ioQQQ, ipH_LIKE, ipHE_LIKE, iso, t_iso::n_HighestResolved_max, and t_iso::nCollapsed_max.

void iso_collapsed_bnl_set ( long  ipISO,
long  nelem 
)

iso_collapsed_bnl_set - set departure coefficients for collapsed levels

Parameters:
ipISO 
nelem 

these are just sanity checks, the interpolated value should be between values at interpolation points

Definition at line 1667 of file iso_create.cpp.

References ASSERT, t_iso::bnl_effective, DEBUG_ENTRY, dense, t_dense::eden, hunt_bisect(), ipH_LIKE, ipHE_LIKE, ipHELIUM, ipHYDROGEN, iso, MAX2, MAX4, MIN2, MIN4, t_iso::n_HighestResolved_max, t_iso::nCollapsed_max, phycon, t_phycon::te, and TotalInsanity().

Referenced by iso_update_rates(), and iso_zero().

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void iso_collapsed_lifetimes_update ( long  ipISO,
long  nelem 
)

iso_collapsed_lifetimes_update - update lifetimes of collapsed levels

Parameters:
ipISO 
nelem 

Definition at line 1955 of file iso_create.cpp.

References ASSERT, DEBUG_ENTRY, iso, t_iso::nCollapsed_max, t_iso::numLevels_max, PI4, t_iso::SmallA, SMALLFLOAT, StatesElemNEW, and Transitions.

Referenced by iso_update_rates(), and iso_zero().

void iso_collide ( long  ipISO,
long  nelem 
)
void iso_collisional_ionization ( long  ipISO,
long  nelem 
)

iso_collisional_ionization - calculate collisional ionization rate for ipISO, nelem

Parameters:
ipISO 
nelem 

Definition at line 24 of file iso_collide.cpp.

References ASSERT, t_iso::ColIoniz, DEBUG_ENTRY, Hion_coll_ioniz_ratecoef(), hydro_vs_ioniz(), Singleton< T >::Inst(), IPCOLLIS, iso, iso_put_error(), t_iso::lgColl_ionize, t_iso::lgLevelsLowered, N_, NISO, t_iso::numLevels_max, phycon, t_phycon::te, and t_iso::xIsoLevNIonRyd.

Referenced by iso_collide().

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void iso_continuum_lower ( long  ipISO,
long  nelem 
)
void iso_cool ( long  ipISO,
long  nelem 
)

iso_cool compute net heating/cooling due to hydrogenc atom species

Parameters:
ipISO the isoelectronic sequence, 0 for H
nelem is element, so 0 for H itself

Referenced by CoolEvaluate().

void iso_create ( void   ) 
double iso_cross_section ( double  ERyd,
double  EthRyd,
long  n,
long  l,
long  S,
long  globalZ,
long  globalISO 
)

iso_cross_section get cross section for a particular level of an iso sequence ion

Parameters:
ERyd 
EthRyd 
n 
l 
S 
Z 
ipISO 

Definition at line 133 of file iso_radiative_recomb.cpp.

References cross_section(), DEBUG_ENTRY, H_cross_section(), He_cross_section(), ipH_LIKE, ipHE_LIKE, and TotalInsanity().

Referenced by iso_recomb_integrand().

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void iso_departure_coefficients ( long  ipISO,
long  nelem 
)

iso_departure_coefficients - calculate departure coefficients

Parameters:
ipISO 
nelem 

Definition at line 449 of file iso_solve.cpp.

References DEBUG_ENTRY, dense, t_iso::DepartCoef, t_dense::eden, iso, t_iso::numLevels_local, t_iso::numLevels_max, t_iso::PopLTE, safe_div(), SMALLFLOAT, StatesElemNEW, and t_dense::xIonDense.

Referenced by iso_solve().

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double iso_dielec_recomb_rate ( long  ipISO,
long  nelem,
long  ipLo 
)

iso_dielec_recomb_rate - get state-specific dielectronic recombination rate

Parameters:
ipISO 
nelem 
ipLo 

Definition at line 1125 of file iso_radiative_recomb.cpp.

References t_phycon::alogte, ASSERT, DEBUG_ENTRY, t_iso::DielecRecombVsTemp, hunt_bisect(), ipHe1s1S, ipHE_LIKE, iso, t_iso::lgDielRecom, NUM_DR_TEMPS, t_iso::numLevels_max, phycon, and pow().

Referenced by iso_radiative_recomb().

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void iso_drive ( void   ) 

iso_drive updates rates and solves level populations for all isoelectronic atoms and ions

Definition at line 27 of file iso_solve.cpp.

References conv, DEBUG_ENTRY, ipH_LIKE, iso_charge_transfer_update(), iso_solve(), iso_update_rates(), LIMELM, NISO, and t_conv::nTotalIoniz.

Referenced by ConvBase().

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void iso_error_generation ( long  ipISO,
long  nelem 
)

iso_error_generation generate gaussian errors

Parameters:
ipISO 
nelem 

Definition at line 39 of file iso_error.cpp.

References ASSERT, DEBUG_ENTRY, t_iso::Error, t_iso::ErrorFactor, IPRAD, iso, t_iso::lgErrGenDone, MyGaussRand(), and t_iso::numLevels_max.

Referenced by iso_update_rates().

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long iso_get_total_num_levels ( long  ipISO,
long  nmaxResolved,
long  numCollapsed 
)

iso_get_total_num_levels - get total number of levels with the given number of resolved and collapsed

Parameters:
ipISO 
nmaxResolved 
numCollapsed 

Definition at line 1613 of file iso_create.cpp.

References DEBUG_ENTRY, ipH_LIKE, ipHE_LIKE, and TotalInsanity().

Referenced by iso_continuum_lower(), iso_recomb_malloc(), and iso_update_num_levels().

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void iso_ionize_recombine ( long  ipISO,
long  nelem 
)

iso_ionize_recombine evaluate state specific creation and destruction processes

Parameters:
ipISO 
nelem 

Referenced by iso_update_rates().

void iso_level ( const long  ipISO,
const long  nelem 
)

iso_level solve for iso-sequence ionization balance

Parameters:
ipISO 
nelem 

Referenced by iso_solve().

void iso_photo ( long  ipISO,
long  nelem 
)

iso_photo do photoionization rates for element nelem on the ipISO isoelectronic sequence

Parameters:
ipISO 
nelem 

Referenced by iso_update_rates().

void iso_prt_pops ( long  ipISO,
long  nelem,
bool  lgPrtDeparCoef 
)

iso_prt_pops routine to print level pops or departure coefficients for iso sequences

Parameters:
ipISO 
nelem 
lgPrtDeparCoef 

Definition at line 472 of file iso_solve.cpp.

References ASSERT, t_elementnames::chElementSym, t_iso::chISO, DEBUG_ENTRY, elementnames, ioQQQ, ipH_LIKE, ipHe2p3P0, ipHe2p3P1, ipHe2p3P2, ipHE_LIKE, iso, ITEM_TO_PRINT, t_iso::n_HighestResolved_local, t_iso::nCollapsed_local, NISO, t_iso::numLevels_local, t_iso::QuantumNumbers2Index, and StatesElemNEW.

Referenced by PrtZone().

void iso_put_error ( long  ipISO,
long  nelem,
long  ipHi,
long  ipLo,
long  whichData,
realnum  errorOpt,
realnum  errorPess 
)

iso_put_error put an error bar on a piece of data, to be used with Gaussian random noise gen

Parameters:
ipISO 
nelem 
ipHi 
ipLo 
whichData 
errorOpt 
errorPess 

Referenced by ForbiddenAuls(), he_1trans(), helike_transprob(), hydro_transprob(), iso_collide(), iso_collisional_ionization(), iso_put_recomb_error(), and iso_radiative_recomb().

void iso_radiative_recomb ( long  ipISO,
long  nelem 
)
void iso_radiative_recomb_effective ( long  ipISO,
long  nelem 
)

iso_radiative_recomb_effective - get effective recomb rate coefficients into each level (including indirect)

Parameters:
ipISO 
nelem 

Definition at line 578 of file iso_radiative_recomb.cpp.

References ASSERT, t_iso::BranchRatio, t_iso::CascadeProb, DEBUG_ENTRY, dprintf(), EN1RYD, t_iso::Error, ioQQQ, IPRAD, ipRecRad, iso, L_, t_iso::lgRandErrGen, MAX2, N_, t_iso::numLevels_local, t_iso::numLevels_max, phycon, pow(), prt_wl(), t_iso::RadEffec, t_iso::RadRecomb, RYDLAM, S_, t_iso::SigmaAtot, t_iso::SigmaCascadeProb, t_iso::SigmaRadEffec, StatesElemNEW, t_phycon::te, wavelength, and t_iso::xIsoLevNIonRyd.

Referenced by iso_update_rates().

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void iso_recomb_auxiliary_free ( void   ) 

iso_recomb_auxiliary_free - free up some auxiliary space associated with iso recombination tables.

Definition at line 801 of file iso_radiative_recomb.cpp.

References DEBUG_ENTRY, NISO, and NumLevRecomb.

Referenced by iso_create().

double iso_recomb_check ( long  ipISO,
long  nelem,
long  level,
double  temperature 
)

iso_recomb_check - called by SanityCheck to confirm that recombination coef are ok, return value is relative error between new calculation of recom, and interp value

Parameters:
ipISO 
nelem the chemical element, 1 for He
level the level, 0 for ground
temperature the temperature to be used

Definition at line 710 of file iso_radiative_recomb.cpp.

References DEBUG_ENTRY, iso_radrecomb_from_cross_section(), iso_RRCoef_Te(), MAX2, phycon, t_phycon::te, and TempChange().

Referenced by SanityCheckBegin().

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void iso_recomb_malloc ( void   ) 

iso_recomb_malloc - malloc space needed for iso recombination tables.

Definition at line 741 of file iso_radiative_recomb.cpp.

References DEBUG_ENTRY, dense, iso, iso_get_total_num_levels(), t_dense::lgElmtOn, LIKE_RREC_MAXN, LIMELM, MALLOC, MAX2, N_ISO_TE_RECOMB, NISO, t_iso::numLevels_max, NumLevRecomb, RRCoef, RREC_MAXN, TeRRCoef, and TotalRecomb.

Referenced by iso_create().

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void iso_recomb_setup ( long  ipISO  ) 
double iso_RRCoef_Te ( long  ipISO,
long  nelem,
long  n 
)

iso_RRCoef_Te - interpolate iso recomb coeff as function of temperature

Parameters:
ipISO 
nelem 
n 

Definition at line 684 of file iso_radiative_recomb.cpp.

References ASSERT, DEBUG_ENTRY, iso, t_iso::lgNoRecombInterp, N_ISO_TE_RECOMB, t_iso::nCollapsed_max, t_iso::numLevels_max, pow(), RRCoef, TempInterp(), TeRRCoef, and TotalRecomb.

Referenced by iso_radiative_recomb(), and iso_recomb_check().

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void iso_satellite_update ( void   ) 
void iso_solve ( long  ipISO,
long  nelem 
)

iso_solve - main routine to call iso_level and determine iso level balances

Parameters:
ipISO 

Definition at line 131 of file iso_solve.cpp.

References ASSERT, DEBUG_ENTRY, dense, t_dense::gas_phase, HydroLevel(), t_dense::IonHigh, t_dense::IonLow, ipH_LIKE, iso, iso_departure_coefficients(), iso_level(), t_dense::lgElmtOn, t_dense::lgSetIoniz, t_iso::nLyaLevel, t_iso::numLevels_max, t_dense::SetIoniz, t_iso::SmallA, StatesElemNEW, Transitions, t_dense::xIonDense, and t_iso::xIonSimple.

Referenced by iso_drive().

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double iso_state_lifetime ( long  ipISO,
long  nelem,
long  n,
long  l 
)

Definition at line 1198 of file iso_create.cpp.

References ASSERT, ATOMIC_MASS_UNIT, t_dense::AtomicWeight, DEBUG_ENTRY, dense, ELECTRON_MASS, FINE_STRUCTURE, H_BAR, ipHE_LIKE, M, pow(), POW2, POW4, SPEEDLIGHT, and Z.

Referenced by FillExtraLymanLine(), and SanityCheckBegin().

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void iso_suprathermal ( long  ipISO,
long  nelem 
)

iso_suprathermal - calculate secondary excitation by suprathermal electrons for iso sequences

Parameters:
ipISO 
nelem 

Definition at line 78 of file iso_collide.cpp.

References ASSERT, DEBUG_ENTRY, t_secondaries::Hx12, ipH2p, ipH_LIKE, ipHYDROGEN, iso, LIMELM, NISO, t_iso::numLevels_max, secondaries, Transitions, and t_secondaries::x12tot.

Referenced by iso_collide().

void iso_update_num_levels ( long  ipISO,
long  nelem 
)

iso_update_num_levels - update level informations for iso sequences

Parameters:
ipISO 
nelem 

Definition at line 1636 of file iso_create.cpp.

References ASSERT, cdEXIT, DEBUG_ENTRY, ioQQQ, iso, iso_get_total_num_levels(), MAX2, max_num_levels, t_iso::n_HighestResolved_local, t_iso::n_HighestResolved_max, t_iso::nCollapsed_local, t_iso::nCollapsed_max, t_iso::numLevels_local, t_iso::numLevels_malloc, and t_iso::numLevels_max.

Referenced by InitCoreload(), InitCoreloadPostparse(), InitSimPostparse(), ParseAtomISO(), and ParseCompile().

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void iso_update_rates ( long  ipISO,
long  nelem 
)

Variable Documentation

EXTERN struct t_iso iso

Referenced by atmdat_2phot_rate(), atmdat_readin(), AtomCSInterp(), Badnell_rec_init(), chkCaHeps(), collision_strength_VF01(), ContCreatePointers(), ContRate(), ContSetIntensity(), ConvBase(), ConvIterCheck(), CoolEvaluate(), cross_section(), CS_l_mixing_S62(), CS_l_mixing_VF01(), CS_ThermAve_PR78(), CS_VS80(), DoFSMixing(), DoSatelliteLines(), DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), DynaStartZone(), FillExtraLymanLine(), ForbiddenAuls(), GrainRateDr(), he_1trans(), HeCollidSetup(), HeCSInterp(), helike_energy(), helike_quantum_defect(), helike_transprob(), hmole_reactions(), hmole_step(), hydro_transprob(), hydro_vs_coll_str(), hydro_vs_deexcit(), HydroCSInterp(), HydroLevel(), HydroRecCool(), HydroRenorm(), InitCoreload(), InitCoreloadPostparse(), InitSimPostparse(), ion_trim(), IonCSInterp(), IonHelium(), IonMagne(), IonOxyge(), ipShells(), iso_allocate(), iso_assign_quantum_numbers(), iso_cascade(), iso_collapsed_Aul_update(), iso_collapsed_bnl_print(), iso_collapsed_bnl_set(), iso_collapsed_lifetimes_update(), iso_collide(), iso_collisional_ionization(), iso_continuum_lower(), iso_cool(), iso_create(), iso_departure_coefficients(), iso_dielec_recomb_rate(), iso_error_generation(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_put_error(), iso_put_recomb_error(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_radrecomb_from_cross_section(), iso_recomb_malloc(), iso_recomb_setup(), iso_RRCoef_Te(), iso_satellite(), iso_satellite_update(), iso_solve(), iso_suprathermal(), iso_update_num_levels(), iso_update_rates(), iso_zero(), IterRestart(), IterStart(), lgCheckMonitors(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), Opacity_iso_photo_cs(), OpacityAdd1Element(), OpacityAddTotal(), OpacityCreateAll(), ParseAtomISO(), ParseCompile(), ParseElement(), ParsePrint(), ParseSet(), PresTotCurrent(), PrintRates(), PrtAllTau(), PrtComment(), PrtContinuum(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), PrtLinePres(), prtmet(), PrtZone(), radius_first(), radius_increment(), radius_next(), RT_continuum(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_stark(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SanityCheckBegin(), save_opacity(), SaveDo(), SaveLineData(), SaveLineStuff(), SaveSpecial(), state_get_put(), store_new_densities(), tfidle(), and zero().

EXTERN long int max_num_levels

Definition at line 9 of file iso.h.

Referenced by InitCoreload(), and iso_update_num_levels().

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