t_dense Struct Reference

#include <dense.h>

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Public Member Functions

 t_dense ()
void SetGasPhaseDensity (const long nelem, const realnum density)
realnum xMolecules (long nelem)
void updateXMolecules ()
void zero ()

Data Fields

realnum gas_phase [LIMELM]
realnum AtomicWeight [LIMELM]
realnum xMassDensity
realnum xMassDensity0
realnum pden
realnum wmole
realnum xNucleiTotal
realnum xMassTotal
realnum HCorrFac
long int IonLow [LIMELM+1]
long int IonHigh [LIMELM+1]
double xIonDense [LIMELM][LIMELM+1]
bool lgIonChiantiOn [LIMELM][LIMELM+1]
bool lgIonStoutOn [LIMELM][LIMELM+1]
double maxWN [LIMELM][LIMELM+1]
realnum AbundanceLimit
bool lgElmtOn [LIMELM]
bool lgSetIoniz [LIMELM]
realnum SetIoniz [LIMELM][LIMELM+1]
char chDenseLaw [5]
bool lgDenseInitConstant
bool lgPressureVaryTime
double PressureVaryTimeTimescale
double PressureVaryTimeIndex
double DensityLaw [10]
bool lgAsChoose [LIMELM][LIMELM]
bool lgCSChoose [LIMELM][LIMELM]
realnum frad [LIMTABDLAW]
realnum fhden [LIMTABDLAW]
long int nvals
bool lgDLWDepth
double eden
double EdenMax
double EdenMin
double density_low_limit
long int nzEdenBad
realnum EdenSet
realnum EdenExtra
realnum EdenFraction
double SqrtEden
double EdenHCorr
realnum EdenHCorr_f
double EdenTrue
double eden_from_metals
bool lgEdenBad
double edensqte
double cdsqte
realnum DensityPower
realnum rscale
realnum den0
bool lgDenFlucOn
bool lgDenFlucRadius
realnum flong
realnum cfirst
realnum csecnd
realnum flcPhase

Private Attributes

realnum m_xMolecules [LIMELM]

Detailed Description

variables dealing with pressure across model

Definition at line 29 of file dense.h.


Constructor & Destructor Documentation

t_dense::t_dense (  )  [inline]

Definition at line 31 of file dense.h.

References AtomicWeight, and zero().

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Member Function Documentation

void t_dense::SetGasPhaseDensity ( const long  nelem,
const realnum  density 
)
void t_dense::updateXMolecules (  ) 

Definition at line 26 of file dense.cpp.

References m_xMolecules, and total_molecule_elems().

Referenced by IterRestart(), mole_return_cached_species(), and ScaleAllDensities().

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realnum t_dense::xMolecules ( long  nelem  )  [inline]

Definition at line 83 of file dense.h.

References m_xMolecules.

Referenced by get_total_abundance_ions(), HomogeneousSource(), lgElemsConserved(), and PrintRates().

void t_dense::zero (  ) 

Definition at line 31 of file dense.cpp.

References ipHYDROGEN, LIMELM, and m_xMolecules.

Referenced by t_dense(), and zero().


Field Documentation

this is lower limit to abundance of element that will be include in the calculation, default is zero, set with command ELEMENT LIMIT OFF XXX command

Definition at line 139 of file dense.h.

Referenced by AbundancesSet(), InitDefaultsPreparse(), and ParseElement().

cdsqte is eden/sqrte times 8.629e-6 - this multiplies the collision strength to produce the deexcitation rate coefficient, s-1 8.629e-6 is COLL_CONST

Definition at line 235 of file dense.h.

Referenced by atom_level2(), atom_level3(), atom_levelN(), atom_pop2(), atom_pop3(), atom_pop5(), AtomSeqBeryllium(), ConvRate2CS(), CoolCalc(), CoolCarb(), CoolEvaluate(), CoolNeon(), CoolNitr(), CoolOxyg(), CoolSili(), EdenChange(), emit_frac(), H21_cm_pops(), LineConvRate2CS(), lines_lv1_li_ne(), oi_level_pops(), and tfidle().

Definition at line 252 of file dense.h.

Referenced by AbundancesSet(), AbundChange(), ParseFluc(), and zoneDensity().

Definition at line 253 of file dense.h.

Referenced by AbundancesSet(), AbundChange(), ParseFluc(), and zoneDensity().

Definition at line 241 of file dense.h.

Referenced by ParseHDEN(), and zoneDensity().

lowest allowed density for any ion = if density falls below this then set to zero in ion_trim

Definition at line 197 of file dense.h.

Referenced by ContSetIntensity(), InitCoreload(), ion_trim(), iso_collide(), and RT_tau_inc().

double t_dense::DensityLaw[10]

parameters set by the dlaw command, used by dense_fabden (maybe)

Definition at line 173 of file dense.h.

Referenced by dense_fabden(), dense_parametric_wind(), ParseDLaw(), and ParseTLaw().

parameters dealing with hydrogen density scaling as power of radius DensityPower is power

Definition at line 239 of file dense.h.

Referenced by ParseCommands(), ParseHDEN(), and zoneDensity().

double t_dense::eden

electron density, units cm-3

Definition at line 190 of file dense.h.

Referenced by AGN_Hemis(), atmdat_3body(), atom_level3(), cdEDEN_last(), collision_strength_VF01(), ContNegative(), ContSetIntensity(), ConvBase(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvPresTempEdenIoniz(), CoolCarb(), CoolChlo(), CoolEvaluate(), CoolIron(), CoolNick(), CoolNitr(), CoolSili(), CoolSulf(), CS_l_mixing_PS64(), CS_l_mixing_VF01(), CS_ThermAve_PR78(), DoSatelliteLines(), DumpLine(), DynaPunchTimeDep(), eden_sum(), EdenChange(), EdenError(), Fe2_cooling(), FeIILevelPops(), find_solution(), fndstr(), GetLineRec(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainElecRecomb1(), GrainTemperature(), diatomics::H2_LevelPops(), diatomics::H2_X_sink_and_source(), HeatSum(), highen(), HydroLevel(), HyperfineCreate(), InitSimPostparse(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), IonHydro(), iso_collapsed_bnl_set(), iso_continuum_lower(), iso_cool(), iso_departure_coefficients(), iso_ionize_recombine(), iso_satellite_update(), iter_end_check(), IterRestart(), IterStart(), lgCheckMonitors(), lgConvEden(), lgStatesConserved(), lines(), lines_continuum(), lines_helium(), lines_hydro(), lines_lv1_k_zn(), lines_lv1_li_ne(), lines_lv1_na_ar(), map_do(), t_mean::MeanInc(), mole_effects(), diatomics::mole_H2_form(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_solve(), OpacityAddTotal(), PresTotCurrent(), PrintRates(), PrtHeader(), PrtHydroTrace1a(), PrtZone(), radius_increment(), radius_next(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_electron_scatter(), RT_LineWidth(), RT_OTS(), RT_stark(), RT_tau_inc(), RT_tau_init(), Save_Line_RT(), SaveDo(), SaveSpecial(), ScaleAllDensities(), SetDeuteriumIonization(), SumDensities(), tfidle(), zero(), and ZoneStart().

fraction of electron density due to ions rather than molecules and grains

Definition at line 224 of file dense.h.

Referenced by eden_sum(), and radius_next().

extra electron density, set with eden command

Definition at line 206 of file dense.h.

Referenced by ContSetIntensity(), eden_sum(), InitDefaultsPreparse(), and ParseEden().

option to set electron fraction, n_e/n_H

Definition at line 209 of file dense.h.

Referenced by eden_sum(), InitDefaultsPreparse(), and ParseSet().

EdenHCorr is eden + hi * 1.7e-4, includes correction for H atom collisions, units cm-3

Definition at line 216 of file dense.h.

Referenced by ContSetIntensity(), CoolCarb(), EdenChange(), HydroLevel(), ColliderList::init(), ion_collis(), IonHydro(), iso_collide(), iso_cool(), iso_ionize_recombine(), iso_level(), IterRestart(), oi_othercs(), PrintRates(), PrtHydroTrace1a(), Save_Line_RT(), SaveDo(), SaveLineData(), and tfidle().

Definition at line 218 of file dense.h.

Referenced by ContSetIntensity(), EdenChange(), IterRestart(), and tfidle().

max and min eden over this iteration

Definition at line 193 of file dense.h.

Referenced by IterStart(), PrtComment(), and radius_increment().

Definition at line 193 of file dense.h.

Referenced by IterStart(), and radius_increment().

EdenSet electron density set with set eden command

Definition at line 203 of file dense.h.

Referenced by ContSetIntensity(), eden_sum(), InitDefaultsPreparse(), and ParseSet().

edensqte is eden/sqrte

Definition at line 230 of file dense.h.

Referenced by EdenChange(), and tfidle().

this is the true eden as set in eden_sum, we will try to converge eden to this

Definition at line 221 of file dense.h.

Referenced by ContSetIntensity(), ConvBase(), ConvEdenIoniz(), ConvFail(), CoolEvaluate(), eden_sum(), EdenError(), HeatSum(), iter_end_check(), IterRestart(), lgConvEden(), lgNetEdenSrcSmall(), lines_grains(), radius_increment(), RT_OTS(), and SaveDo().

Definition at line 181 of file dense.h.

Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().

Definition at line 254 of file dense.h.

Referenced by AbundancesSet(), AbundChange(), InitDefaultsPreparse(), ParseFluc(), and zoneDensity().

parameters for the density fluctuations command

Definition at line 251 of file dense.h.

Referenced by AbundChange(), InitDefaultsPreparse(), ParseFluc(), radius_first(), radius_next(), and zoneDensity().

frad is log radius in cm, fhden is log hden

Definition at line 180 of file dense.h.

Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().

this is scale factor that multiplies the correction factor for neutral hydrogen collisions, def 1, changed with set command

Definition at line 111 of file dense.h.

Referenced by CoolCarb(), EdenChange(), ParseSet(), tfidle(), and zero().

long int t_dense::IonHigh[LIMELM+1]
long int t_dense::IonLow[LIMELM+1]

indices for lowest stage of ionization of the elements on C scale, lowest is 0 for atom, -1 if element turned off, the first stage of ionization with positive abundance is [IonLow] where 0 is the atom, the highest stage of ionization with positive abundance is [IonHigh], NB NB so loops should be ion=IonLow, ion<=IonHigh

Definition at line 119 of file dense.h.

Referenced by ChargTranPun(), ContSetIntensity(), ConvBase(), CoolEvaluate(), DynaIonize(), fill_array(), find_solution(), get_total_abundance_ions(), GrainChargeTemp(), HeatSum(), ion_collis(), ion_CX(), ion_photo(), ion_recomb(), ion_recombAGN(), ion_solver(), ion_trim(), iso_collapsed_update(), iso_level(), iso_solve(), iso_update_rates(), IterRestart(), IterStart(), lgTrivialSolution(), lines_general(), map_do(), mole_eval_dynamic_balance(), mole_ion_trim(), PresTotCurrent(), RT_diffuse(), and store_new_densities().

options on set atomic data command

Definition at line 176 of file dense.h.

Referenced by InitDefaultsPreparse().

Definition at line 177 of file dense.h.

set true when density fluctuations are turned on

Definition at line 244 of file dense.h.

Referenced by AbundancesSet(), AbundChange(), InitDefaultsPreparse(), ParseFluc(), PrtZone(), and radius_next().

set false when fluctuations are over col den rather than radius, set with column options on fluctuations command

Definition at line 248 of file dense.h.

Referenced by AbundChange(), InitDefaultsPreparse(), ParseFluc(), and zoneDensity().

Definition at line 162 of file dense.h.

Referenced by ConvInitSolution(), InitDefaultsPreparse(), and ParseConstant().

lg is true if depth, false if radius to be used

Definition at line 187 of file dense.h.

Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().

flags set when bad electron density is detected

Definition at line 227 of file dense.h.

Referenced by ConvInitSolution(), and PrtComment().

array of logical variables saying whether an element is enable (true) or disabled (false). It is set totally true in zero and is set false with the "element off" command. In SetAbundances if can be reset so that an element that was disabled on the first model in a core load is not later enabled

Definition at line 146 of file dense.h.

Referenced by AbundancesPrt(), AbundancesSet(), AbundChange(), atmdat_readin(), Badnell_rec_init(), check_co_ion_converge(), ChemImportance(), ContCreatePointers(), ContRate(), ContSetIntensity(), ConvBase(), ConvIterCheck(), CoolEvaluate(), DoSatelliteLines(), DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), DynaStartZone(), GetStandardHeLines(), GrainChargeTemp(), GrainChrgTransferRates(), GrainCollHeating(), GrainElecEmis1(), GrainElecRecomb1(), GrainRateDr(), HeatSum(), HighestIonStage(), InitCoreload(), InitCoreloadPostparse(), InitSimPostparse(), ion_photo(), ion_wrapper(), IonHelium(), IonNelem(), iso_allocate(), iso_assign_quantum_numbers(), iso_collapsed_update(), iso_cool(), iso_create(), iso_recomb_malloc(), iso_recomb_setup(), iso_satellite(), iso_satellite_update(), iso_solve(), iso_update_rates(), iso_zero(), iter_end_check(), IterRestart(), IterStart(), lgCheckMonitors(), lgElemsConserved(), lgNetEdenSrcSmall(), lgStatesConserved(), lines_continuum(), lines_helium(), lines_hydro(), lines_lv1_k_zn(), map_do(), mole_create_react(), mole_eval_sources(), mole_h_rate_diagnostics(), mole_ion_trim(), mole_update_limiting_reactants(), OpacityAddTotal(), OpacityCreateAll(), OpacityValenceRescale(), parse_species_label(), ParseCompile(), ParseElement(), prt_smooth_predictions(), PrtAllTau(), PrtColumns(), PrtComment(), PrtFinal(), PrtMeanIon(), prtmet(), PrtZone(), radius_increment(), radius_next(), RT_diffuse(), RT_line_all(), RT_OTS(), RT_stark(), RT_tau_init(), RT_tau_reset(), SanityCheckBegin(), SaveDo(), SaveLineData(), SaveLineStuff(), ScaleAllDensities(), state_get_put(), states_nelemfill(), SumDensities(), and UpdateRecomZ0().

which ions have chianti enabled?

Definition at line 128 of file dense.h.

Referenced by CoolDima(), CoolEvaluate(), InitCoreload(), and states_nelemfill().

which ions have stout enabled?

Definition at line 131 of file dense.h.

Referenced by CoolDima(), CoolEvaluate(), InitCoreload(), and states_nelemfill().

Definition at line 165 of file dense.h.

Referenced by ConvInitSolution(), InitDefaultsPreparse(), and ParseConstant().

will we solve for ionization (false) or specify it with element ionization cmnd true

Definition at line 149 of file dense.h.

Referenced by ContSetIntensity(), ConvBase(), InitCoreload(), IonHelium(), IonHydro(), iso_level(), lgTrivialSolution(), ParseElement(), and PrtComment().

dense.xMolecules density of elements locked in molecules, this is included in gas_phase

Definition at line 80 of file dense.h.

Referenced by updateXMolecules(), xMolecules(), and zero().

Maximum wavenumber in chianti

Definition at line 134 of file dense.h.

Referenced by CoolDima(), InitCoreload(), and states_nelemfill().

long int t_dense::nvals

number of values in above table

Definition at line 184 of file dense.h.

Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().

zone where bad electron density was detected

Definition at line 200 of file dense.h.

Referenced by ConvInitSolution(), PrtComment(), and radius_increment().

total number of particles per cubic centimeter

Definition at line 98 of file dense.h.

Referenced by ConvInitSolution(), IterStart(), PresTotCurrent(), radius_first(), radius_increment(), SaveDo(), and SumDensities().

Definition at line 170 of file dense.h.

Referenced by ConvInitSolution(), InitDefaultsPreparse(), and ParseConstant().

Definition at line 168 of file dense.h.

Referenced by ConvInitSolution(), InitDefaultsPreparse(), and ParseConstant().

Definition at line 240 of file dense.h.

Referenced by ParseHDEN(), and zoneDensity().

dense.SetIoniz the ionization fractions that are set when lgSetIoniz set true, gas phase abundance is this times total aabundance Ionization fraction for [nelem][ion]

Definition at line 154 of file dense.h.

Referenced by ContSetIntensity(), ConvBase(), IonHelium(), IonHydro(), lgTrivialSolution(), and ParseElement().

square root of electron density, set in tfidle

Definition at line 212 of file dense.h.

Referenced by EdenChange(), GrainDrift(), and tfidle().

mean AMU per particle

Definition at line 101 of file dense.h.

Referenced by dense_parametric_wind(), PrtFinal(), radius_first(), radius_increment(), and SumDensities().

dense.xIonDense[nelem][i] is density of ith ionization stage (cm^-3), [nelem][0] is atom, [][1]) the first ion nelem = 0 for H, 1 for he, etc

Definition at line 125 of file dense.h.

Referenced by AbundancesSet(), AbundChange(), AGN_Hemis(), atom_level2(), atom_level3(), atom_oi_calc(), t_fe2ovr_la::atoms_fe2ovr(), AtomSeqBeryllium(), AtomSeqBoron(), ChargTranSumHeat(), check_co_ion_converge(), ContSetIntensity(), ConvBase(), ConvInitSolution(), CoolAlum(), CoolArgo(), CoolCalc(), CoolCarb(), CoolChlo(), CoolChro(), CoolDima(), CoolEvaluate(), CoolIron(), CoolMagn(), CoolNeon(), CoolNick(), CoolNitr(), CoolOxyg(), CoolPhos(), CoolScan(), CoolSili(), CoolSodi(), CoolSulf(), dBase_solve(), DoSatelliteLines(), DynaIonize(), eden_sum(), EdenChange(), Fe2_cooling(), Fe3Lev14(), Fe4Lev12(), FeII_RT_Out(), FeIILevelPops(), FeIIPunPop(), FeIISumBand(), fill_array(), find_solution(), get_total_abundance_ions(), GetLineRec(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainElecEmis1(), GrainElecRecomb1(), GrainMakeDiffuse(), GrnStdDpth(), GrnVryDpth(), diatomics::H2_X_coll_rate_evaluate(), HeatSum(), highen(), HighestIonStage(), HomogeneousSource(), HydroLevel(), HyperfineCreate(), ColliderList::init(), InitSimPostparse(), ion_CX(), ion_photo(), ion_recomb(), ion_trim(), ion_wrapper(), IonHelium(), IonHydro(), IonNelem(), iso_charge_transfer_update(), iso_continuum_lower(), iso_cool(), iso_departure_coefficients(), iso_level(), iso_renorm(), iso_satellite_update(), iso_zero(), iter_end_check(), IterRestart(), IterStart(), lgCheckMonitors(), lgElemsConserved(), lgNetEdenSrcSmall(), lgOH_ChargeTransferDominant(), lgStatesConserved(), lgTrivialSolution(), ligbar(), lines(), lines_continuum(), lines_helium(), lines_hydro(), lines_lv1_k_zn(), lines_lv1_li_ne(), lines_lv1_na_ar(), lines_molecules(), MakeCS(), map_do(), t_mean::MeanInc(), mole_effects(), mole_eval_dynamic_balance(), diatomics::mole_H2_form(), mole_h_fixup(), mole_h_rate_diagnostics(), mole_ion_trim(), mole_solve(), oi_cs(), oi_othercs(), OpacityAdd1Element(), OpacityAddTotal(), PresTotCurrent(), PrintRates(), PrtZone(), radius_first(), radius_increment(), radius_next(), RT_continuum(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_all(), RT_OTS(), RT_OTS_PrtRate(), RT_tau_inc(), SanityCheckBegin(), save_opacity(), SaveDo(), SaveHeat(), SaveLineData(), ScaleIonDensities(), store_new_densities(), SumDensities(), tfidle(), UpdateRecomZ0(), UpdateUTAs(), and zero().

WJH: fiducial value that corresponds to hden set in init file, this is used for setting the mass-flux in dynamic models

Definition at line 95 of file dense.h.

Referenced by DynaFlux(), SumDensities(), and zero().

total mass in grams PER 4 pi rinner^2

Definition at line 107 of file dense.h.

Referenced by GravitationalPressure(), iter_end_check(), IterStart(), PrtFinal(), radius_increment(), and zero().

total number of nuclei, set in PressureTotal

Definition at line 104 of file dense.h.

Referenced by ConvBase(), dBase_solve(), iso_continuum_lower(), iso_cool(), RT_tau_init(), SumDensities(), and zero().


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