cloudy
trunk
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#include <save.h>
Public Member Functions | |
t_save () | |
~t_save () | |
void | SaveLineListFree (long i) |
void | SaveAverageFree (long i) |
void | SetSaveHeaderNeeded (bool lgVal) |
bool | lgSaveTitle (int ipPun) const |
void | SaveTitleDone (int ipPun) |
bool | lgSaveHeader (int ipPun) const |
void | SaveHeaderDone (int ipPun) |
Private Attributes | |
bool | p_lgSaveTitleDone [LIMPUN] |
bool | p_lgSaveHeaderDone [LIMPUN] |
bool | p_lgSaveHeaderNeeded |
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Definition at line 209 of file save.h.
References FITStype, lgFITS, LIMPUN, nAverageList, nLineList, p_lgSaveHeaderDone, p_lgSaveHeaderNeeded, and p_lgSaveTitleDone.
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Definition at line 223 of file save.h.
References LIMPUN, SaveAverageFree(), and SaveLineListFree().
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is it OK to save header now?
Definition at line 345 of file save.h.
References ipPun, p_lgSaveHeaderDone, and p_lgSaveHeaderNeeded.
Referenced by SaveDo(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesOptDep(), and SaveSpeciesPseudoCont().
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is it OK to save title now?
Definition at line 338 of file save.h.
References ipPun, p_lgSaveHeaderNeeded, and p_lgSaveTitleDone.
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Definition at line 237 of file save.h.
References chAverageType, chSaveSpecies, nAverage2ndPar, nAverageIonList, and nAverageList.
Referenced by parse_save_average(), and ~t_save().
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Definition at line 349 of file save.h.
References ipPun, and p_lgSaveHeaderDone.
Referenced by SaveDo(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesOptDep(), and SaveSpeciesPseudoCont().
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Definition at line 232 of file save.h.
References chLineListLabel, and wlLineList.
Referenced by ParseSave(), and ~t_save().
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Definition at line 342 of file save.h.
References ipPun, and p_lgSaveTitleDone.
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vector<string> t_save::chAverageType[LIMPUN] |
chAverageType is label for type of average
Definition at line 262 of file save.h.
Referenced by parse_save_average(), save_average(), and SaveAverageFree().
const char* t_save::chConSavEnr[LIMPUN] |
chConPunEnr - units of continuum in save output
Definition at line 387 of file save.h.
Referenced by AnuUnit(), ParseSave(), Save1Line(), and Save1LineData().
string t_save::chFilenamePrefix |
this is a prefix that will be set at the start of all save file names normally an empty string, set with PUNCH PREFIX command or -p flag
Definition at line 413 of file save.h.
Referenced by cdMain(), ParseSave(), ParseSet(), and process_output().
string t_save::chGridPrefix |
this is a prefix that will be used at the start of all file names when doing an MPI grid run, normally an empty string, set with -g flag
Definition at line 409 of file save.h.
Referenced by cdMain(), and ParseSave().
char t_save::chHashString[INPUT_LINE_LENGTH] |
this is the hash string, normally a set of hash marks, can be reset with set save hash command
Definition at line 398 of file save.h.
Referenced by check_grid_file(), ConvBase(), InitDefaultsPreparse(), ParseSet(), radius_first(), SaveDo(), and SaveLineStuff().
vector<string> t_save::chLineListLabel[LIMPUN] |
chLineListLabel is label for line list
Definition at line 252 of file save.h.
Referenced by ParseSave(), SaveDo(), and SaveLineListFree().
char t_save::chOpcTyp[LIMPUN][5] |
which opacity to save out
Definition at line 310 of file save.h.
Referenced by ParseSave(), and save_opacity().
string t_save::chOutputFile |
this is the name of the main output file we are writing to it is set by calling cdOutput()
Definition at line 421 of file save.h.
Referenced by cdOutput(), cdRead(), and ParseDont().
char t_save::chPunRltType[7] |
set with save line intensities and save results commands, says whether results arrays produced by routine PunResults1Line should be column or array
Definition at line 426 of file save.h.
Referenced by ParseSave().
string t_save::chRedirectPrefix |
this is the prefix that will be set at the start of the input and output file normally an empty string, set with -p or -r flag
Definition at line 417 of file save.h.
Referenced by cdMain(), main(), process_output(), and vary_input().
char t_save::chSave[LIMPUN][5] |
chSave - what is it we want to save? set in GetPunch, used in DoPunch
Definition at line 306 of file save.h.
Referenced by diatomics::H2_ParseSave(), ParseSave(), and SaveDo().
char t_save::chSaveArgs[LIMPUN][5] |
set of optional arguments for save command, but as a string
Definition at line 368 of file save.h.
Referenced by ParseSave(), SaveDo(), SaveSpecies(), and SaveSpeciesPseudoCont().
vector<string> t_save::chSaveSpecies[LIMPUN] |
Definition at line 370 of file save.h.
Referenced by parse_save_average(), ParseSave(), save_average(), SaveAverageFree(), SaveDo(), and SaveSpecies().
string t_save::chSpeciesDominantRates[LIMPUN] |
Definition at line 480 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSave(), and SaveDo().
vector<string> t_save::contSaveSpeciesLabel |
Parameters for saving the pseudocontinuum
Definition at line 491 of file save.h.
Referenced by ParseSave(), PseudoContCreate(), and SpeciesPseudoContCreate().
Definition at line 483 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSave(), and SaveDo().
int t_save::FITStype[LIMPUN] |
which FITS type is in this file
Definition at line 380 of file save.h.
Referenced by ParseSave(), process_output(), and t_save().
FILE* t_save::ioRecom |
option to save recombination coefficients to external file
Definition at line 457 of file save.h.
Referenced by atmdat_3body(), CloseSaveFiles(), ion_recomb(), iso_radiative_recomb(), and SaveFilesInit().
long int t_save::ipConPun |
this global variable is index of save command loop in dopunch
Definition at line 390 of file save.h.
Referenced by AnuUnit(), Save1Line(), Save1LineData(), and SaveDo().
FILE* t_save::ipDRout |
these control saving choice of dr - this is not really a save command ipDRout is io unit, lgDROn says saving dr logic has been set, and lgDRPLst says to save the last iteration
Definition at line 446 of file save.h.
Referenced by CloseSaveFiles(), radius_first(), radius_next(), and SaveFilesInit().
long t_save::ipEmisFreq[LIMPUN] |
Definition at line 484 of file save.h.
Referenced by InitDefaultsPreparse(), and SaveDo().
FILE* t_save::ipPoint |
option to save out pointers with save pointers command ipPoint is save file handle, lgPunPoint says whether we will do it
Definition at line 431 of file save.h.
Referenced by CloseSaveFiles(), OpacityCreate1Element(), and SaveFilesInit().
FILE* t_save::ipPunConv |
Definition at line 436 of file save.h.
Referenced by CloseSaveFiles(), ConvIterCheck(), and SaveFilesInit().
FILE* t_save::ipSDSFile |
Definition at line 441 of file save.h.
Referenced by database_readin(), ion_recom_calculate(), and read_UTA_lines().
FILE* t_save::ipTraceConvergeBase |
Definition at line 454 of file save.h.
Referenced by CloseSaveFiles(), ConvBase(), and SaveFilesInit().
bool t_save::lg_separate_iterations[LIMPUN] |
option to not insert end-of-iteration separator - used for save files that create one line per iteration
Definition at line 319 of file save.h.
Referenced by check_grid_file(), InitDefaultsPreparse(), and SaveDo().
bool t_save::lgCumulative[LIMPUN] |
cumulative line intensities for time dependent sim
Definition at line 294 of file save.h.
Referenced by ParseSave(), and SaveDo().
bool t_save::lgDRHash |
Definition at line 447 of file save.h.
Referenced by InitDefaultsPreparse(), and radius_first().
bool t_save::lgDROn |
Definition at line 447 of file save.h.
Referenced by CloseSaveFiles(), radius_first(), radius_next(), and SaveFilesInit().
bool t_save::lgDROn_noclobber |
Definition at line 279 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgDRPLst |
Definition at line 447 of file save.h.
Referenced by InitDefaultsPreparse(), and radius_next().
bool t_save::lgEmergent[LIMPUN] |
emergent or intrinsic line intensities
Definition at line 291 of file save.h.
Referenced by ParseSave(), SaveDo(), and SaveLineIntensity().
bool t_save::lgFITS[LIMPUN] |
flag saying that this save file is in FITS format
Definition at line 377 of file save.h.
Referenced by check_grid_file(), CloseSaveFiles(), ParseSave(), SaveDo(), and t_save().
bool t_save::lgFLUSH |
flush file after every iteration
Definition at line 401 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSet(), and SaveDo().
bool t_save::lgHashEndIter[LIMPUN] |
should hash marks be printed after every iteration? default is yes, set no with no hash option on save command
Definition at line 394 of file save.h.
Referenced by check_grid_file(), InitDefaultsPreparse(), ParseSave(), and SaveDo().
bool t_save::lgioRecom |
Definition at line 458 of file save.h.
Referenced by atmdat_3body(), CloseSaveFiles(), ion_recomb(), iso_radiative_recomb(), and SaveFilesInit().
bool t_save::lgioRecom_noclobber |
Definition at line 281 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgLineListRatio[LIMPUN] |
flag saying whether to take ratio (true) of pairs
Definition at line 256 of file save.h.
Referenced by ParseSave(), and SaveDo().
bool t_save::lgLinEvery |
Definition at line 463 of file save.h.
Referenced by ParseSave(), and SaveDo().
bool t_save::lgLuminosityOld |
in save continuum output, in the luminosity case, use old style of luminosity per inner cloud area rather than true luminosity
Definition at line 405 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSet(), and ZoneStart().
bool t_save::lgNoClobber[LIMPUN] |
option to append instead of overwrite
Definition at line 272 of file save.h.
Referenced by CloseSaveFiles(), ParseSave(), and SaveFilesInit().
bool t_save::lgPrtIsotropicCont[LIMPUN] |
option to remove isotropic continua from the output of 'save continuum'
Definition at line 300 of file save.h.
Referenced by ParseSave(), and SaveDo().
bool t_save::lgPrtOldStyleLogs[LIMPUN] |
print old style logs
Definition at line 275 of file save.h.
Referenced by ParseSave(), and PrtLogLin().
bool t_save::lgPunchFits |
bool t_save::lgPunContinuum |
flag saying whether any save continuum commands were entered set true in parsecontinuum when save continuum entered, used in PrtComment to warn if continuum punched with no iterations
Definition at line 354 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSave(), and PrtComment().
bool t_save::lgPunConv |
unit number, and flag, for saving reason for continued iterations
Definition at line 435 of file save.h.
Referenced by CloseSaveFiles(), ConvIterCheck(), and SaveFilesInit().
bool t_save::lgPunConv_noclobber |
these are for some special cases, same purpose as previous no clobber
Definition at line 278 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgPunLstIter[LIMPUN] |
lg flag lgPunLstIter for this save option, do we only want to save on last iteration?
Definition at line 374 of file save.h.
Referenced by ParseSave(), and SaveDo().
bool t_save::lgPunPoint |
Definition at line 432 of file save.h.
Referenced by CloseSaveFiles(), OpacityCreate1Element(), and SaveFilesInit().
bool t_save::lgPunPoint_noclobber |
Definition at line 280 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgQHSaveFile_noclobber |
Definition at line 282 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgRealSave[LIMPUN] |
is this a real save command, or one of the similar options like save dr, which is not done in save files
Definition at line 288 of file save.h.
Referenced by SaveDo(), and SaveFilesInit().
bool t_save::lgSaveDataGf |
Definition at line 488 of file save.h.
Referenced by InitDefaultsPreparse(), and SaveSpeciesLines().
bool t_save::lgSaveDataRates |
Definition at line 488 of file save.h.
Referenced by InitDefaultsPreparse(), and SaveSpeciesLines().
bool t_save::lgSaveDataWn |
Definition at line 488 of file save.h.
Referenced by InitDefaultsPreparse(), and SaveSpeciesLines().
bool t_save::lgSaveEveryZone[LIMPUN] |
implement save every option - lgSaveEveryZone true if want to save every zone, nSaveEveryZone is number of zones to save
Definition at line 364 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSave(), and SaveDo().
bool t_save::lgSaveGrid_noclobber |
Definition at line 284 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgSaveToSeparateFiles[LIMPUN] |
this flag tells us whether to save results of a grid to separate files for each grid point or all to the same file. Different for different save commands
Definition at line 315 of file save.h.
Referenced by ParseSave(), and process_output().
bool t_save::lgSDSOn |
Identify whether Save Data Sources is on
Definition at line 440 of file save.h.
Referenced by database_readin(), ion_recom_calculate(), and read_UTA_lines().
bool t_save::lgSubtrCont |
user-defined option to subtract continuum in reported line flux
Definition at line 297 of file save.h.
Referenced by InitDefaultsPreparse(), ParseDont(), and set_xIntensity().
bool t_save::lgTraceConvergeBase |
Definition at line 452 of file save.h.
Referenced by CloseSaveFiles(), ConvBase(), and SaveFilesInit().
bool t_save::lgTraceConvergeBase_noclobber |
Definition at line 283 of file save.h.
Referenced by CloseSaveFiles(), and SaveFilesInit().
bool t_save::lgTraceConvergeBaseHash |
Definition at line 452 of file save.h.
Referenced by ConvBase(), and InitDefaultsPreparse().
long int t_save::LinEvery |
option to save line intensities every for every zone logical variable says whether LinEvery was set
Definition at line 462 of file save.h.
Referenced by ParseSave(), and SaveDo().
vector<int> t_save::nAverage2ndPar[LIMPUN] |
nAverage2ndPar is set of second parameters for averages
Definition at line 266 of file save.h.
Referenced by parse_save_average(), save_average(), and SaveAverageFree().
vector<int> t_save::nAverageIonList[LIMPUN] |
nAverageIonList is set of ions for averages
Definition at line 264 of file save.h.
Referenced by parse_save_average(), save_average(), and SaveAverageFree().
long t_save::nAverageList[LIMPUN] |
following are for save averages option nAverageList is number of averages, -1 if not defined
Definition at line 260 of file save.h.
Referenced by parse_save_average(), save_average(), SaveAverageFree(), and t_save().
long int t_save::ncSaveSkip |
set skip sets this variable, which says how many cells to skip in save
Definition at line 466 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSet(), and SaveDo().
long t_save::nLineList[LIMPUN] |
following are for save LineList option nLineList is number of em lines, -1 if not defined
Definition at line 250 of file save.h.
Referenced by ParseSave(), SaveDo(), and t_save().
long int t_save::nsave |
number of save commands entered
Definition at line 303 of file save.h.
Referenced by CloseSaveFiles(), diatomics::H2_ParseSave(), InitDefaultsPreparse(), ParseSave(), ParseSet(), process_output(), and SaveDo().
long int t_save::nSaveEveryZone[LIMPUN] |
Definition at line 365 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSave(), and SaveDo().
string t_save::optname[LIMPUN] |
punarg is set of optional arguments for the save command
Definition at line 360 of file save.h.
Referenced by ParseSave(), and SaveDo().
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flag saying whether the header has been saved already. Used in grid runs so that the header only gets saved once.
Definition at line 328 of file save.h.
Referenced by lgSaveHeader(), SaveHeaderDone(), and t_save().
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flag saying whether a header is needed at all Used in grid runs so that the header only gets saved once.
Definition at line 332 of file save.h.
Referenced by lgSaveHeader(), lgSaveTitle(), SetSaveHeaderNeeded(), and t_save().
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flag saying whether the title has been saved already. Used in grid runs so that the title only gets saved once.
Definition at line 324 of file save.h.
Referenced by lgSaveTitle(), SaveTitleDone(), and t_save().
SaveParams t_save::params[LIMPUN] |
this is the file where we will direct the output
Definition at line 269 of file save.h.
Referenced by CloseSaveFiles(), ParseSave(), save_average(), SaveDo(), SaveFilesInit(), SaveSpeciesBands(), SaveSpeciesOptDep(), and SaveSpeciesPseudoCont().
punarg is set of optional arguments for the save command
Definition at line 357 of file save.h.
Referenced by diatomics::H2_ParseSave(), diatomics::H2_PunchDo(), ParseSave(), save_opacity(), SaveDo(), SaveLineIntensity(), and SaveSpeciesPseudoCont().
realnum t_save::Resolution |
contrast factor for lines to continuum in save output default is 1 (gives correct line intensities) and changed with set width command (enters width in km/sec)
Definition at line 475 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSet(), and SaveDo().
realnum t_save::ResolutionAbs |
Definition at line 478 of file save.h.
Referenced by InitDefaultsPreparse(), ParseSet(), and PrettyTransmission().
vector<adjPseudoCont> t_save::setPseudoCont |
Definition at line 492 of file save.h.
Referenced by getAdjPseudoIndex(), getPseudoWlRange(), and ParseSet().
vector<save_species_bands> t_save::specBands |
Definition at line 496 of file save.h.
Referenced by ParseSave(), specBandsExists(), and SpeciesBandsCreate().
string t_save::SpeciesBandFile[LIMPUN] |
Parameters for species bands
Definition at line 495 of file save.h.
Referenced by ParseSave(), and SaveDo().
realnum t_save::WeakHeatCool |
threshold for faintest cooling or heating to be punched default is set to 0.05 in scalar, can be reset with 'set weakheatcool'
Definition at line 470 of file save.h.
Referenced by CoolSave(), InitDefaultsPreparse(), ParseSet(), and SaveHeat().
Definition at line 307 of file save.h.
Referenced by diatomics::H2_ParseSave(), and SaveDo().
wlLineList is set of emission lines for LineList
Definition at line 254 of file save.h.
Referenced by ParseSave(), SaveDo(), and SaveLineListFree().