save_species.cpp File Reference

#include "cddefines.h"
#include "taulines.h"
#include "radius.h"
#include "save.h"
#include "mole.h"
#include "mole_priv.h"
#include "generic_state.h"
#include "iterations.h"
#include "dense.h"
#include "prt.h"

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Data Structures
class	Field
class	RateCmp

Functions
STATIC void	SaveSpeciesLines (FILE *ioPUN, const vector< genericState > &speciesList)
STATIC void	SaveSpeciesOne (const vector< genericState > &SpeciesList, double(*job)(const genericState &), bool lgZonal, const char *chFmt, FILE *ioPUN)
STATIC void	SaveSpeciesHeader (const vector< genericState > &SpeciesList, const char *chJob, bool lgZonal, FILE *ioPUN, size_t maxLevels)
void	SaveSpecies (FILE *ioPUN, long int ipPun)
STATIC void	PrintShortZero (FILE *ioPUN, const char *chFmt, double arg)
STATIC void	SaveAllSpeciesLabelsLevels (FILE *ioPUN, const vector< genericState > &speciesList)
void	SaveSpeciesOptDep (const long int ipPun, const string &speciesLabel)
STATIC void	doHeader (FILE *punit, const Field &f)
STATIC void	doData (FILE *punit, const Field &f)
STATIC bool	isCatalystReactant (const mole_reaction &rate, int i)
STATIC bool	isCatalystProduct (const mole_reaction &rate, int i)
STATIC bool	isDestroyed (const mole_reaction &rate, int i)
STATIC bool	isCreated (const mole_reaction &rate, int i)
void	mole_save (FILE *punit, const char speciesname[], const char args[], bool lgHeader, bool lgData, bool lgCoef, double depth)
void	mole_dominant_rates (const vector< const molecule * > &debug_list, FILE *ioOut, bool lgPrintReagents, size_t NPRINT, double fprint)
void	mole_print_species_reactions (molecule *speciesToPrint)

Variables
const bool	lgRowPerZone = true

Function Documentation

STATIC void doData	(	FILE *	punit,
		const Field &	f
	)

Definition at line 480 of file save_species.cpp.

References DEBUG_ENTRY, Field::fmt, fprintf(), and Field::value().

Referenced by mole_save().

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STATIC void doHeader	(	FILE *	punit,
		const Field &	f
	)

Definition at line 475 of file save_species.cpp.

References DEBUG_ENTRY, fprintf(), and Field::label.

Referenced by mole_save().

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STATIC bool isCatalystProduct ( const mole_reaction &  rate, int  i  )

inline

Definition at line 490 of file save_species.cpp.

References mole_reaction::pvector.

Referenced by isCreated(), and mole_save().

STATIC bool isCatalystReactant ( const mole_reaction &  rate, int  i  )

inline

Definition at line 486 of file save_species.cpp.

References mole_reaction::rvector.

Referenced by isDestroyed(), and mole_save().

STATIC bool isCreated ( const mole_reaction &  rate, int  i  )

inline

Definition at line 498 of file save_species.cpp.

References isCatalystProduct(), and mole_reaction::pvector_excit.

Referenced by mole_save().

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STATIC bool isDestroyed ( const mole_reaction &  rate, int  i  )

inline

Definition at line 494 of file save_species.cpp.

References isCatalystReactant(), and mole_reaction::rvector_excit.

Referenced by mole_save().

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void mole_dominant_rates	(	const vector< const molecule * > &	debug_list,
		FILE *	ioOut,
		bool	lgPrintReagents,
		size_t	NPRINT,
		double	fprint
	)

Definition at line 589 of file save_species.cpp.

References fprintf(), mole_reaction::index, molecule::index, mole, mole_reaction::nproducts, mole_reaction::nreactants, mole_reaction::products, mole_reaction::pvector, mole_priv::reactab, mole_reaction::reactants, t_mole_local::reaction_rks, mole_reaction::rvector, and t_mole_local::species.

Referenced by ConvBase(), and SaveDo().

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void mole_print_species_reactions

(

molecule *

speciesToPrint

)

Definition at line 723 of file save_species.cpp.

References fprintf(), mole_reaction::index, molecule::index, ioQQQ, mole_reaction::label, molecule::label, mole, mole_reaction::nproducts, mole_reaction::nreactants, mole_reaction::products, mole_reaction::pvector, mole_priv::reactab, mole_reaction::reactants, t_mole_local::reaction_rks, mole_reaction::rvector, and t_mole_local::species.

Referenced by lgElemsConserved(), and mole_system_error().

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void mole_save	(	FILE *	punit,
		const char	speciesname[],
		const char	args[],
		bool	lgHeader,
		bool	lgData,
		bool	lgCoef,
		double	depth
	)

Definition at line 504 of file save_species.cpp.

References DEBUG_ENTRY, doData(), doHeader(), findspecies(), fprintf(), mole_reaction::index, molecule::index, isCatalystProduct(), isCatalystReactant(), isCreated(), isDestroyed(), mole_reaction::label, mole, mole_reaction::nproducts, mole_reaction::nreactants, null_mole, mole_reaction::products, mole_priv::reactab, mole_reaction::reactants, t_mole_local::reaction_rks, and t_mole_local::species.

Referenced by ConvBase(), and SaveDo().

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STATIC void PrintShortZero	(	FILE *	ioPUN,
		const char *	chFmt,
		double	arg
	)

Definition at line 160 of file save_species.cpp.

References DEBUG_ENTRY, and fprintf().

Referenced by SaveSpeciesOne().

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STATIC void SaveAllSpeciesLabelsLevels	(	FILE *	ioPUN,
		const vector< genericState > &	speciesList
	)

SaveAllSpeciesLabelsLevels – generate output of all species labels & levels

Definition at line 261 of file save_species.cpp.

References chemical_to_spectral(), fprintf(), and null_molezone.

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void SaveSpecies	(	FILE *	ioPUN,
		long int	ipPun
	)

SaveSpecies generate output for the save species command

Parameters

ioPUN	io unit for save
ipPun	arrayin save array

Definition at line 35 of file save_species.cpp.

References ASSERT, cdEXIT, t_save::chSaveArgs, t_save::chSaveSpecies, column(), DEBUG_ENTRY, density(), depart(), energy(), EXIT_FAILURE, fprintf(), ioQQQ, ipPun, levels(), molezone::levels, t_save::lgSaveHeader(), t_mole_global::list, matchGeneric(), MAX2, mole, mole_global, null_molezone, save, t_save::SaveHeaderDone(), SaveSpeciesHeader(), SaveSpeciesLines(), SaveSpeciesOne(), qList::size(), t_mole_local::species, and TotalInsanity().

Referenced by SaveDo().

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STATIC void SaveSpeciesHeader	(	const vector< genericState > &	SpeciesList,
		const char *	chJob,
		bool	lgZonal,
		FILE *	ioPUN,
		size_t	maxLevels
	)

Definition at line 173 of file save_species.cpp.

References DEBUG_ENTRY, and fprintf().

Referenced by SaveSpecies().

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STATIC void SaveSpeciesLines	(	FILE *	ioPUN,
		const vector< genericState > &	speciesList
	)

Definition at line 289 of file save_species.cpp.

References chemical_to_spectral(), dense, fprintf(), ipNCOLLIDER, t_dense::lgElmtOn, t_save::lgSaveDataGf, t_save::lgSaveDataRates, t_save::lgSaveDataWn, null_molezone, prt_wl(), save, and SaveAllSpeciesLabelsLevels().

Referenced by SaveSpecies().

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STATIC void SaveSpeciesOne	(	const vector< genericState > &	SpeciesList,
		double(*)(const genericState &)	job,
		bool	lgZonal,
		const char *	chFmt,
		FILE *	ioPUN
	)

Definition at line 216 of file save_species.cpp.

References DEBUG_ENTRY, t_radius::depth_mid_zone, fprintf(), PrintShortZero(), and radius.

Referenced by SaveSpecies().

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void SaveSpeciesOptDep	(	const long int	ipPun,
		const string &	speciesLabel
	)

SaveSpeciesOptDep – generate output for 'save species optical depth'

Parameters

ipPun	array index in save array
speciesLabel	label to acquire species

Definition at line 418 of file save_species.cpp.

References DEBUG_ENTRY, fprintf(), getSpecies(), ioQQQ, SaveParams::ipPnunit, iterations, genericState::label(), t_iterations::lgLastIt, t_save::lgSaveHeader(), molezone::lines, t_save::params, save, t_save::SaveHeaderDone(), and genericState::sp.

Referenced by SaveDo().

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Variable Documentation

const bool lgRowPerZone = true

Definition at line 171 of file save_species.cpp.