species.cpp File Reference

#include "cddefines.h"
#include "species.h"
#include "taulines.h"
#include "input.h"
#include "dense.h"
#include "atmdat.h"
#include "elementnames.h"
#include "version.h"
#include "save.h"
#include "mole.h"
#include "service.h"
#include "parse_species.h"
#include "prt.h"

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Macros
#define	DEBUGSTATE   false

Functions
STATIC void	states_popfill (void)
STATIC void	states_nelemfill (void)
STATIC void	database_prep (int)
STATIC void	trim_levels (long)
STATIC void	set_fractionation (species *sp)
STATIC void	states_propprint (void)
void	database_readin (void)
void	parsespect (char *chLabel, long &nelem, long &IonStg)
string	makeChemical (long nelem, long ion)
void	makeChemical (char *chLabelChemical, long nelem, long ion)
STATIC void	spectral_to_chemical (char *chLabelChemical, char *chLabel, long &nelem, long &IonStg)
void	spectral_to_chemical (char *chLabelChemical, char *chLabel)
void	chemical_to_spectral (const string chLabelChem, string &chLabelSpec)

Macro Definition Documentation

#define DEBUGSTATE   false

Definition at line 41 of file species.cpp.

Referenced by database_readin(), and trim_levels().

Function Documentation

void chemical_to_spectral	(	const string	chLabelChem,
		string &	chLabelSpec
	)

Definition at line 981 of file species.cpp.

References DEBUG_ENTRY, and isElementSym().

Referenced by species_bands::insert(), SaveAllSpeciesLabelsLevels(), and SaveSpeciesLines().

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STATIC void database_prep

(

int

intSpIndex

)

Definition at line 1142 of file species.cpp.

References atmdat, BIGFLOAT, dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, ipCRD, ipCRDW, ipIRON, ipPRD, t_atmdat::ipSpecIon, and SMALLFLOAT.

Referenced by database_readin().

void database_readin

(

void

)

Definition at line 42 of file species.cpp.

References AllTransitions, AS_LOCAL_ONLY_TRY, ASSERT, atmdat, atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), AtmolCollRateCoeff, AtmolCollSplines, cdEXIT, CHARS_SPECIES, t_atmdat::chCloudyChiantiFile, t_atmdat::chdBaseSources, t_input::chDelimiter, check_data(), t_elementnames::chElementSym, t_atmdat::chLamdaFile, t_atmdat::chStoutFile, t_atmdat::chVersion, database_prep(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, DEBUGSTATE, elementnames, EXIT_FAILURE, FFmtRead(), FILENAME_PATH_LENGTH_2, findspecies(), fixit, fprintf(), input, Singleton< t_version >::Inst(), ioQQQ, ipdBaseTrans, ipNCOLLIDER, t_save::ipSDSFile, t_atmdat::iVersionLength, t_atmdat::lgCalpgmOn, t_atmdat::lgChiantiOn, t_atmdat::lgdBaseSourceExists, t_atmdat::lgLamdaOn, t_save::lgSDSOn, t_atmdat::lgStoutOn, LIMELM, nSpecies, null_mole, open_data(), read_whole_line(), save, set_fractionation(), speciesCheck(), states_nelemfill(), states_popfill(), states_propprint(), StoutCollData, TotalInsanity(), toupper(), trim_levels(), trimTrailingWhiteSpace(), and uncaps().

Referenced by atmdat_readin().

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string makeChemical	(	long	nelem,
		long	ion
	)

Definition at line 928 of file species.cpp.

References t_elementnames::chElementSym, DEBUG_ENTRY, and elementnames.

Referenced by InitCoreloadPostparse(), iso_allocate(), makeChemical(), ParseSave(), save_opacity(), setProperties(), and spectral_to_chemical().

void makeChemical	(	char *	chLabelChemical,
		long	nelem,
		long	ion
	)

Definition at line 945 of file species.cpp.

References CHARS_SPECIES, DEBUG_ENTRY, and makeChemical().

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void parsespect	(	char *	chLabel,
		long &	nelem,
		long &	IonStg
	)

Definition at line 899 of file species.cpp.

References t_elementnames::chElementSym, DEBUG_ENTRY, elementnames, and LIMELM.

Referenced by setProperties(), and spectral_to_chemical().

STATIC void set_fractionation

(

species *

sp

)

Definition at line 854 of file species.cpp.

References species::chLabel, DEBUG_ENTRY, fixit, species::fracIsotopologue, and species::fracType.

Referenced by database_readin().

STATIC void spectral_to_chemical	(	char *	chLabelChemical,
		char *	chLabel,
		long &	nelem,
		long &	IonStg
	)

Definition at line 952 of file species.cpp.

References ASSERT, cdEXIT, t_elementnames::chElementSym, DEBUG_ENTRY, elementnames, EXIT_FAILURE, fprintf(), ioQQQ, LIMELM, makeChemical(), NISO, and parsespect().

Referenced by atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), spectral_to_chemical(), and states_nelemfill().

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void spectral_to_chemical	(	char *	chLabelChemical,
		char *	chLabel
	)

Definition at line 973 of file species.cpp.

References DEBUG_ENTRY, and spectral_to_chemical().

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STATIC void states_nelemfill

(

void

)

Definition at line 1032 of file species.cpp.

References atmdat, t_dense::AtomicWeight, CHARS_SPECIES, dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, dense, findspecies(), fixit, fprintf(), molecule::index, ioQQQ, ipHYDROGEN, t_atmdat::ipSpecIon, t_atmdat::lgChiantiHybrid, t_dense::lgElmtOn, t_dense::lgIonChiantiOn, t_dense::lgIonStoutOn, t_atmdat::lgStoutHybrid, t_prt::matrix, t_dense::maxWN, mole, nSpecies, null_mole, prt, t_prt_matrix::species, t_mole_local::species, spectral_to_chemical(), and TotalInsanity().

Referenced by database_readin().

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STATIC void states_popfill

(

void

)

Definition at line 885 of file species.cpp.

References dBaseSpecies, dBaseStates, DEBUG_ENTRY, and nSpecies.

Referenced by database_readin().

STATIC void states_propprint

(

void

)

Definition at line 1119 of file species.cpp.

References dBaseSpecies, dBaseStates, DEBUG_ENTRY, energy(), and nSpecies.

Referenced by database_readin().

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STATIC void trim_levels

(

long

ipSpecies

)

trim_levels: Trim the highest energy levels until there is a transition out of the highest level with an Aul value that is not the default. The default value of 1e-30 is used when no Aul is given in the database.

Definition at line 797 of file species.cpp.

References atmdat, t_atmdat::aulThreshold, cdEXIT, dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, DEBUGSTATE, EXIT_FAILURE, fprintf(), ioQQQ, ipdBaseTrans, t_atmdat::lgChiantiPrint, t_atmdat::lgLamdaPrint, and t_atmdat::lgStoutPrint.

Referenced by database_readin().

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