/home66/gary/public_html/cloudy/c10_branch/source/h2_priv.h File Reference

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Typedefs

typedef multi_arr< transition, 6 >
::iterator 
mt6i
typedef multi_arr< transition, 6 >
::const_iterator 
mt6ci

Functions

double H2_He_coll (int init, int final, double temp)
long int H2_He_coll_init (const char FILE_NAME_IN[])
double H2_ORH2_coll (int init, int final, double temp)
double H2_PAH2_coll (int init, int final, double temp)
long int H2_ORH2_coll_init (const char FILE_NAME_IN[])
long int H2_PAH2_coll_init (const char FILE_NAME_IN[])
void H2_ReadEnergies (long int nelec)
void H2_ReadDissprob (long int nelec)
void H2_CollidRateEvalAll (void)
void H2_CollidRateRead (long int nColl)
void H2_ReadTransprob (long int nelec)
void H2_Read_hminus_distribution (void)
void mole_H2_form (void)
void mole_H2_LTE (void)
void H2_Solomon_rate (void)
void H2_gs_rates (void)
void H2_zero_pops_too_low (void)

Variables

const double ENERGY_H2_STAR = 4100.
const bool CR_PRINT = false
const int CR_X = 1
const int CR_VIB = 15
const int CR_J = 10
const int CR_EXIT = 3
const int N_X_COLLIDER = 5
const int chN_X_COLLIDER = 10
EXTERN char chH2ColliderLabels [N_X_COLLIDER][chN_X_COLLIDER]
const int VIB_COLLID = 3
const int nTE_HMINUS = 7
EXTERN long int nEner_H2_ground
EXTERN multi_arr< double, 3 > H2_populations
EXTERN multi_arr< double, 3 > H2_rad_rate_out
EXTERN multi_arr< double, 2 > pops_per_vib
EXTERN double H2_renorm_chemistry
EXTERN double H2_sum_excit_elec_den
EXTERN multi_arr< realnum, 2 > H2_X_colden
EXTERN multi_arr< double, 2 > H2_X_rate_from_elec_excited
EXTERN multi_arr< double, 2 > H2_X_rate_to_elec_excited
EXTERN multi_arr< realnum, 2 > H2_X_coll_rate
EXTERN multi_arr< realnum, 2 > H2_X_colden_LTE
EXTERN long int nLevels_per_elec [N_H2_ELEC]
EXTERN double pops_per_elec [N_H2_ELEC]
EXTERN multi_arr< double, 3 > energy_wn
EXTERN multi_arr< realnum, 6 > CollRateFit
EXTERN multi_arr< realnum, 3 > H2_dissprob
EXTERN multi_arr< realnum, 3 > H2_disske
EXTERN multi_arr< realnum, 5 > H2_CollRate
EXTERN multi_arr< double, 3 > H2_old_populations
EXTERN multi_arr< double, 3 > H2_Boltzmann
EXTERN multi_arr< double, 3 > H2_populations_LTE
EXTERN multi_arr< realnum, 3 > H2_stat
EXTERN multi_arr< bool, 3 > H2_lgOrtho
EXTERN long int nzoneAsEval
EXTERN long int iterationAsEval
EXTERN multi_arr< int, 2 > H2_ipPhoto
EXTERN multi_arr< double, 2 > H2_col_rate_in
EXTERN multi_arr< double, 2 > H2_col_rate_out
EXTERN multi_arr< double, 2 > H2_rad_rate_in
EXTERN realnumH2_X_source
EXTERN realnumH2_X_sink
EXTERN multi_arr< realnum, 3 > H2_X_grain_formation_distribution
EXTERN multi_arr< realnum, 2 > H2_X_formation
EXTERN multi_arr< realnum, 2 > H2_X_Hmin_back
EXTERN multi_arr< realnum, 2 > H2_coll_dissoc_rate_coef
EXTERN multi_arr< realnum, 2 > H2_coll_dissoc_rate_coef_H2
EXTERN double H2_den_s
EXTERN double H2_den_g
EXTERN multi_arr< realnum, 3 > H2_X_hminus_formation_distribution
EXTERN realnumH2_energies
EXTERN long int nH2_energies
EXTERN long int * H2_ipX_ener_sort
EXTERN long int * ipVib_H2_energy_sort
EXTERN long int * ipElec_H2_energy_sort
EXTERN long int * ipRot_H2_energy_sort
EXTERN multi_arr< long int, 3 > ipEnergySort
EXTERN long int nXLevelsMatrix
EXTERN multi_arr< realnum, 6 > H2_SaveLine
EXTERN multi_arr< bool, 6 > lgH2_line_exists
EXTERN long int nH2_pops
EXTERN long int nH2_zone
EXTERN long int nzone_nlevel_set
EXTERN long int nCallH2_this_iteration
int H2_nRot_add_ortho_para [N_H2_ELEC]
double H2_DissocEnergies [N_H2_ELEC]
realnum H2_te_hminus [nTE_HMINUS]

Typedef Documentation

typedef multi_arr<transition,6>::const_iterator mt6ci

Definition at line 240 of file h2_priv.h.

typedef multi_arr<transition,6>::iterator mt6i

Definition at line 239 of file h2_priv.h.


Function Documentation

void H2_CollidRateEvalAll ( void   ) 
void H2_CollidRateRead ( long int  nColl  ) 
void H2_gs_rates ( void   ) 

H2_gs_rates evaluate rates between ground and star states of H2 for use in chemistry

Definition at line 147 of file mole_h2_etc.cpp.

References DEBUG_ENTRY, h2, H2_den_g, H2_dissprob, t_hmi::H2_H2g_to_H2s_rate_BigH2, H2_ipX_ener_sort, H2_populations, H2_rad_rate_out, H2Lines, hmi, ipRot_H2_energy_sort, ipVib_H2_energy_sort, t_h2::Jlowest, lgH2_line_exists, MAX2, mole, t_mole::n_h2_elec_states, nEner_H2_ground, t_h2::nRot_hi, t_h2::nVib_hi, and SDIV().

Referenced by H2_LevelPops().

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double H2_He_coll ( int  init,
int  final,
double  temp 
)

H2_He_coll Interpolate the rate coefficeints The range of the temperature is between 2K - 1e8K

Parameters:
init 
final 
temp 

Todo:
1 fix this hack - Phillip Stancil is refitting

Definition at line 966 of file mole_h2_coll.cpp.

References b2, DEBUG_ENTRY, H2_He_coll_fit_par, ioQQQ, lgDefn_H2He_coll, MIN2, phycon, pow(), and t_phycon::te.

Referenced by H2_CollidRateEvalOne().

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long int H2_He_coll_init ( const char  FILE_NAME_IN[]  ) 

H2_He_coll_init receives the name of the file that contrains the fitting coefficeints of all transitions and read into 3d vectors. It outputs 'test.out' to test the arrays return value is magic number

Parameters:
FILE_NAME_IN[] 

Definition at line 678 of file mole_h2_coll.cpp.

References cdEXIT, t_input::chDelimiter, DEBUG_ENTRY, FILENAME_PATH_LENGTH_2, H2_He_coll_fit_par, input, INPUT_LINE_LENGTH, lgDefn_H2He_coll, MALLOC, N_H2_HE_FIT_PAR, nLevels_per_elec, open_data(), and read_whole_line().

Referenced by H2_CollidRateRead().

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double H2_ORH2_coll ( int  init,
int  final,
double  temp 
)

Definition at line 1088 of file mole_h2_coll.cpp.

References b2, DEBUG_ENTRY, H2_ORH2_coll_fit_par, ioQQQ, lgDefn_H2ORH2_coll, and pow().

Referenced by H2_CollidRateEvalOne().

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long int H2_ORH2_coll_init ( const char  FILE_NAME_IN[]  ) 

Definition at line 789 of file mole_h2_coll.cpp.

References cdEXIT, DEBUG_ENTRY, H2_ORH2_coll_fit_par, INPUT_LINE_LENGTH, lgDefn_H2ORH2_coll, MALLOC, N_H2_ORH2_FIT_PAR, nLevels_per_elec, open_data(), and read_whole_line().

Referenced by H2_CollidRateRead().

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double H2_PAH2_coll ( int  init,
int  final,
double  temp 
)

Definition at line 1195 of file mole_h2_coll.cpp.

References b2, DEBUG_ENTRY, H2_PAH2_coll_fit_par, ioQQQ, lgDefn_H2PAH2_coll, and pow().

Referenced by H2_CollidRateEvalOne().

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long int H2_PAH2_coll_init ( const char  FILE_NAME_IN[]  ) 

Definition at line 877 of file mole_h2_coll.cpp.

References cdEXIT, DEBUG_ENTRY, H2_PAH2_coll_fit_par, INPUT_LINE_LENGTH, lgDefn_H2PAH2_coll, MALLOC, N_H2_PAH2_FIT_PAR, nLevels_per_elec, open_data(), and read_whole_line().

Referenced by H2_CollidRateRead().

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void H2_Read_hminus_distribution ( void   ) 

H2_Read_hminus_distribution read distribution function for H2 population following formation from H minus

Definition at line 911 of file mole_h2_io.cpp.

References ASSERT, BadRead(), cdEXIT, t_input::chDelimiter, DEBUG_ENTRY, FFmtRead(), FILENAME_PATH_LENGTH_2, h2, H2_te_hminus, H2_X_hminus_formation_distribution, H2HMINUS_PRT, input, INPUT_LINE_LENGTH, ioQQQ, t_h2::Jlowest, t_h2::nRot_hi, nTE_HMINUS, t_h2::nVib_hi, open_data(), pow(), and read_whole_line().

Referenced by H2_Create().

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void H2_ReadDissprob ( long int  nelec  ) 

read dissociation probabilities and kinetic energies for all electronic levels

Parameters:
nelec 

Definition at line 810 of file mole_h2_io.cpp.

References ASSERT, COmole_rate_s::b, BadRead(), cdEXIT, t_input::chDelimiter, DEBUG_ENTRY, FFmtRead(), FILENAME_PATH_LENGTH_2, h2, H2_disske, H2_dissprob, input, INPUT_LINE_LENGTH, ioQQQ, t_h2::Jlowest, N_H2_ELEC, t_h2::nRot_hi, t_h2::nVib_hi, open_data(), and read_whole_line().

Referenced by H2_Create().

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void H2_ReadEnergies ( long int  nelec  ) 

read energies for all electronic levels

Parameters:
nelec 

Definition at line 710 of file mole_h2_io.cpp.

References ASSERT, BadRead(), cdEXIT, t_input::chDelimiter, DEBUG_ENTRY, energy_wn, FFmtRead(), FILENAME_PATH_LENGTH_2, h2, input, INPUT_LINE_LENGTH, ioQQQ, t_h2::Jlowest, N_H2_ELEC, nLevels_per_elec, t_h2::nRot_hi, t_h2::nVib_hi, open_data(), and read_whole_line().

Referenced by H2_Create().

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void H2_ReadTransprob ( long int  nelec  ) 

read transition probabilities

Parameters:
nelec 

Todo:
2 the "50" here and in h2.h should be made a macro.

Definition at line 464 of file mole_h2_io.cpp.

References AddLine2Stack(), ASSERT, BadRead(), cdEXIT, t_input::chDelimiter, DEBUG_ENTRY, energy_wn, FFmtRead(), FILENAME_PATH_LENGTH_2, h2, H2Lines, input, INPUT_LINE_LENGTH, ioQQQ, lgH2_line_exists, N_H2_ELEC, t_h2::nRot_hi, t_h2::nVib_hi, open_data(), read_whole_line(), and ShowMe().

Referenced by H2_Create().

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void H2_Solomon_rate ( void   ) 
void H2_zero_pops_too_low ( void   ) 
void mole_H2_form ( void   ) 
void mole_H2_LTE ( void   ) 

mole_H2_LTE sets Boltzmann factors and LTE unit population of large H2 molecular

Definition at line 313 of file mole_h2_etc.cpp.

References ASSERT, DEBUG_ENTRY, energy_wn, fp_equal(), h2, H2_Boltzmann, H2_populations_LTE, H2_stat, ioQQQ, t_h2::Jlowest, mole, t_mole::n_h2_elec_states, t_mole::nH2_TRACE, t_mole::nH2_trace_full, t_h2::nRot_hi, t_h2::nVib_hi, phycon, sexp(), t_phycon::te, and t_phycon::te_wn.

Referenced by H2_LevelPops().

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Variable Documentation

Definition at line 98 of file h2_priv.h.

Referenced by H2_init_coreload(), and H2_ParseSave().

const int chN_X_COLLIDER = 10

labels for the colliders

Definition at line 97 of file h2_priv.h.

Referenced by H2_ParseSave().

this is the actual rate, cm^3 s^-1, for each collider CollRate[coll_type][vib_up][rot_up][vib_lo][rot_lo]

Definition at line 148 of file h2_priv.h.

Referenced by H2_CollidRateEvalOne(), H2_CollidRateRead(), and H2_Create().

const int CR_EXIT = 3

Definition at line 90 of file h2_priv.h.

const int CR_J = 10

Definition at line 89 of file h2_priv.h.

const bool CR_PRINT = false

Definition at line 86 of file h2_priv.h.

const int CR_VIB = 15

Definition at line 88 of file h2_priv.h.

const int CR_X = 1

Definition at line 87 of file h2_priv.h.

const double ENERGY_H2_STAR = 4100.

this is the energy, above which levels are considered to be H2*, and below which they are H2 - it is converted from eV into wavenumbers since energy scale energy_wn[][][] is in these terms

Definition at line 20 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), H2_Solomon_rate(), and mole_H2_form().

EXTERN multi_arr<double,3> energy_wn
EXTERN multi_arr<double,3> H2_Boltzmann
EXTERN multi_arr<double,2> H2_col_rate_in

Definition at line 169 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), and H2_PunchDo().

EXTERN multi_arr<double,2> H2_col_rate_out

Definition at line 170 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), and H2_PunchDo().

save rate coef (cm3 s-1) for collisional dissociation

Definition at line 187 of file h2_priv.h.

Referenced by H2_CollidRateEvalAll(), H2_Create(), and H2_X_coll_rate_evaluate().

save rate coef (cm3 s-1) for collisional dissociation with H2g and H2s

Definition at line 190 of file h2_priv.h.

Referenced by H2_CollidRateEvalAll(), H2_Create(), H2_LevelPops(), and H2_X_coll_rate_evaluate().

EXTERN double H2_den_g

Definition at line 193 of file h2_priv.h.

Referenced by H2_gs_rates(), H2_LevelPops(), and H2_Solomon_rate().

EXTERN double H2_den_s

density of H2s and H2g during current iteration

Definition at line 193 of file h2_priv.h.

Referenced by H2_LevelPops(), and H2_Solomon_rate().

Definition at line 152 of file h2_priv.h.

Referenced by H2_Cooling(), H2_Create(), and H2_ReadDissprob().

double H2_DissocEnergies[N_H2_ELEC]

these will mostly become xxx[elec][vib][rot]

Definition at line 151 of file h2_priv.h.

Referenced by H2_Cooling(), H2_Create(), H2_gs_rates(), H2_LevelPops(), H2_ReadDissprob(), and H2_Solomon_rate().

these are energies and indices for levels within X , a vector of sorted energies

Definition at line 200 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), and H2_LevelPops().

EXTERN multi_arr<int,2> H2_ipPhoto

Definition at line 166 of file h2_priv.h.

Referenced by H2_Create(), and H2_X_coll_rate_evaluate().

EXTERN long int* H2_ipX_ener_sort
EXTERN multi_arr<bool,3> H2_lgOrtho

this is true if state is para, false if ortho

Definition at line 162 of file h2_priv.h.

Referenced by cdH2_Line(), H2_CollidRateEvalOne(), H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), and H2_PunchDo().

int H2_nRot_add_ortho_para[N_H2_ELEC]

the remainder can't be EXTERN since init to values in h2.c

Definition at line 64 of file mole_h2.cpp.

Referenced by H2_Create().

EXTERN multi_arr<double,3> H2_old_populations

these will mostly become xxx[elec][vib][rot]

Definition at line 156 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), H2_PunchDo(), and H2_zero_pops_too_low().

EXTERN multi_arr<double,3> H2_populations
EXTERN multi_arr<double,3> H2_populations_LTE
EXTERN multi_arr<double,2> H2_rad_rate_in

Definition at line 171 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), and H2_PunchDo().

EXTERN multi_arr<double,3> H2_rad_rate_out

Definition at line 113 of file h2_priv.h.

Referenced by H2_Create(), H2_gs_rates(), H2_LevelPops(), H2_PunchDo(), and H2_Solomon_rate().

EXTERN double H2_renorm_chemistry

the renorm factor for this H2 to the chemistry - should be unity

Definition at line 119 of file h2_priv.h.

Referenced by H2_Cooling(), H2_LevelPops(), H2_PunchDo(), and H2_RT_tau_inc().

this is array of accumulated line intensities, used for save he lines command

Definition at line 213 of file h2_priv.h.

Referenced by cdH2_Line(), H2_Create(), H2_LinesAdd(), H2_PunchDo(), and H2_Reset().

this is total statistical weight, including nuclear spin

Definition at line 160 of file h2_priv.h.

Referenced by H2_Cooling(), H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), H2_PunchDo(), H2_X_coll_rate_evaluate(), and mole_H2_LTE().

EXTERN double H2_sum_excit_elec_den

Definition at line 119 of file h2_priv.h.

Referenced by H2_LevelPops(), and H2_Solomon_rate().

temperature where H- distribution are set

Definition at line 54 of file mole_h2.cpp.

Referenced by H2_Read_hminus_distribution(), and mole_H2_form().

column density within X only vib and rot

Definition at line 123 of file h2_priv.h.

Referenced by cdH2_colden(), H2_Colden(), H2_Create(), H2_Prt_column_density(), and H2_PunchDo().

LTE column density within X only vib and rot

Definition at line 135 of file h2_priv.h.

Referenced by H2_Colden(), H2_Create(), and H2_PunchDo().

rate [s-1} for collisions from ihi to ilo

Definition at line 132 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), and H2_X_coll_rate_evaluate().

formation into specific states within X only vib and rot, includes both H- and H2 routes

Definition at line 181 of file h2_priv.h.

Referenced by H2_Create(), H2_X_coll_rate_evaluate(), and mole_H2_form().

distribution function for formation on grain surfaces, vib, rot, last dim is grain type

Definition at line 177 of file h2_priv.h.

Referenced by H2_Create(), and mole_H2_form().

backwards destruction of v,J levels due to the H- route

Definition at line 184 of file h2_priv.h.

Referenced by H2_Create(), H2_X_coll_rate_evaluate(), and mole_H2_form().

vib, rot, last dim is temperature

Definition at line 196 of file h2_priv.h.

Referenced by H2_Create(), H2_Read_hminus_distribution(), and mole_H2_form().

rates [cm-3 s-1] from elec excited states into X only vib and rot

Definition at line 126 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), and H2_LevelPops().

rates [s-1] to elec excited states from X only vib and rot

Definition at line 129 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), and H2_LevelPops().

EXTERN realnum* H2_X_sink

Definition at line 173 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), and H2_X_coll_rate_evaluate().

Definition at line 172 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), and H2_X_coll_rate_evaluate().

EXTERN long int * ipElec_H2_energy_sort

Definition at line 204 of file h2_priv.h.

Referenced by H2_Create().

EXTERN multi_arr<long int,3> ipEnergySort

Definition at line 206 of file h2_priv.h.

Referenced by H2_Create().

EXTERN long int* ipRot_H2_energy_sort
EXTERN long int* ipVib_H2_energy_sort
EXTERN long int iterationAsEval

Definition at line 164 of file h2_priv.h.

Referenced by H2_Level_low_matrix(), H2_Reset(), and H2_Zero().

EXTERN multi_arr<bool,6> lgH2_line_exists

fully defined array saying whether (true) or not (false) a radiative decay is defined by the standard emission line structure

Definition at line 217 of file h2_priv.h.

Referenced by cdH2_Line(), H2_Accel(), H2_ContPoint(), H2_Create(), H2_gs_rates(), H2_Level_low_matrix(), H2_LevelPops(), H2_LinesAdd(), H2_LineZero(), H2_PunchDo(), H2_RadPress(), H2_ReadTransprob(), H2_RT_diffuse(), H2_RT_OTS(), H2_RT_tau_inc(), H2_RT_tau_reset(), H2_RTMake(), H2_Solomon_rate(), and H2_zero_pops_too_low().

const int N_X_COLLIDER = 5

the number of different types of colliders

Definition at line 94 of file h2_priv.h.

Referenced by H2_CollidRateEvalAll(), H2_CollidRateEvalOne(), H2_CollidRateRead(), H2_Cooling(), H2_Create(), H2_ParseSave(), H2_PunchDo(), and H2_X_coll_rate_evaluate().

EXTERN long int nCallH2_this_iteration

the number of times the H2 molecules has been called in this iteration. For the very first call we will use lte for the level H2_populations, for later calls use the last solution

Definition at line 229 of file h2_priv.h.

Referenced by H2_Cooling(), H2_LevelPops(), H2_Reset(), H2_RT_tau_inc(), and H2_Zero().

EXTERN long int nEner_H2_ground

number of levels in H2g

Definition at line 110 of file h2_priv.h.

Referenced by H2_Create(), and H2_gs_rates().

EXTERN long int nH2_energies

the total number of energies

Definition at line 202 of file h2_priv.h.

Referenced by H2_Create().

EXTERN long int nH2_pops

counters used by H2_itrzn to find number of calls of h2 per zone

Definition at line 220 of file h2_priv.h.

Referenced by H2_itrzn(), H2_LevelPops(), H2_Reset(), and H2_Zero().

EXTERN long int nH2_zone

Definition at line 221 of file h2_priv.h.

Referenced by H2_itrzn(), H2_LevelPops(), H2_Reset(), and H2_Zero().

EXTERN long int nLevels_per_elec[N_H2_ELEC]
const int nTE_HMINUS = 7

the number of temperature points in the data file

Definition at line 104 of file h2_priv.h.

Referenced by H2_Create(), H2_Read_hminus_distribution(), and mole_H2_form().

EXTERN long int nXLevelsMatrix

number of levels within X which are done with matrix solver, set with atom h2 matrix command

Definition at line 210 of file h2_priv.h.

Referenced by H2_Create(), H2_Level_low_matrix(), H2_LevelPops(), H2_Zero(), and ParseAtomH2().

EXTERN long int nzone_nlevel_set

this is used to establish zone number for evaluation of number of levels in matrix

Definition at line 224 of file h2_priv.h.

Referenced by H2_LevelPops(), H2_Reset(), and H2_Zero().

EXTERN long int nzoneAsEval

Definition at line 164 of file h2_priv.h.

Referenced by H2_Level_low_matrix(), H2_Reset(), and H2_Zero().

EXTERN double pops_per_elec[N_H2_ELEC]

the total population in each elec state

Definition at line 141 of file h2_priv.h.

Referenced by H2_LevelPops(), H2_PunchDo(), and H2_zero_pops_too_low().

EXTERN multi_arr<double,2> pops_per_vib

total population in each vib state

Definition at line 116 of file h2_priv.h.

Referenced by H2_Create(), H2_LevelPops(), H2_Prt_column_density(), H2_Prt_Zone(), and H2_zero_pops_too_low().

const int VIB_COLLID = 3

this is the highest vib state that has collision data

Definition at line 101 of file h2_priv.h.

Referenced by H2_CollidRateRead(), H2_Cooling(), and H2_Create().

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