#include "cdstd.h"
#include <cstdarg>
#include "cddefines.h"
#include "service.h"
#include "cddrive.h"
#include "called.h"
#include "opacity.h"
#include "rfield.h"
#include "hextra.h"
#include "struc.h"
#include "fudgec.h"
#include "broke.h"
#include "trace.h"
#include "input.h"
#include "save.h"
#include "version.h"
#include "warnings.h"
#include "conv.h"
#include "atmdat.h"
#include "mole.h"
#include "prt.h"
#include "integrate.h"

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Functions
char *	read_whole_line (char chLine, int nChar, FILE ioIN)

void	Split (const string &str, const string &sep, vector< string > &lst, split_mode mode)

void	trimTrailingWhiteSpace (string &str)

void	trimTrailingWhiteSpace (char *str)

void	MyAssert (const char file, int line, const char comment)

double	AnuUnit (realnum energy_ryd)

void	ShowMe (void)

void	cap4 (char chCAP, const char chLab)

void	uncaps (char *chCard)

void	caps (char *chCard)

double	FFmtRead (const char chCard, long int ipnt, long int last, bool *lgEOL)

long	nMatch (const char chKey, const char chCard)

double	fudge (long int ipnt)

int	GetQuote (char chStringOut, char chCard, char *chCardRaw, bool lgAbort)

double	powi (double x, long int n)

double	powpq (double x, int p, int q)

long	ipow (long m, long n)

size_t	strnlen (const char *s, size_t maxlen)

size_t	sncatf (char buf, size_t bufSize, const char fmt,...)

size_t	sncatf (ostringstream &str, const char *fmt,...)

void	PrintE82 (FILE *ioOUT, double value)

void	PrintE71 (FILE *ioOUT, double value)

void	PrintE93 (FILE *ioOUT, double value)

NORETURN void	TotalInsanity (void)

NORETURN void	BadRead (void)

sys_float	sexp (sys_float x)

double	sexp (double x)

double	dsexp (double x)

void	TestCode (void)

void	broken (void)

void	fixit_base (const char func, const char file, int line, const char *reason)

void	CodeReview (void)

int	dprintf (FILE fp, const char format,...)

int	fprintf (const Output &stream, const char *format,...)

int	dprintf (const Output &stream, const char *format,...)

int	dbg_printf (int debug, const char *fmt,...)

double	qg32 (double xl, double xu, double(*fct)(double))

void	spsort (realnum x[], long int n, long int iperm[], int kflag, int *ier)

STATIC void	MyMalloc_base (void ptr, size_t size, const char chFile, int line)

void *	MyMalloc (size_t size, const char *chFile, int line)

void *	MyMalloc_avx (size_t size, const char *chFile, int line)

double	csphot (long int inu, long int ithr, long int iofset)

double	RandGauss (double xMean, double s)

double	MyGaussRand (double PctUncertainty)

double	plankf (long int ip)

void	CloudyPrintReference ()

void	DatabasePrintReference ()

istream &	SafeGetline (istream &is, string &t)

Variables
static const double	pos_pow10 []

static const int	max_pow10 = int(sizeof(pos_pow10)/sizeof(pos_pow10[0]) - 1)

static const double	neg_pow10 []

static const int	min_pow10 = -int(sizeof(neg_pow10)/sizeof(neg_pow10[0]) - 1)

Function Documentation

double AnuUnit ( realnum energy )

AnuUnit produce continuum energy in arbitrary units, ip is on C scale

Definition at line 197 of file service.cpp.

References t_save::chConSavEnr, DEBUG_ENTRY, Energy::get(), t_save::ipConPun, and save.

Referenced by AGN_Hemis(), energy(), pseudo_cont::getWl(), Save1Line(), Save1LineData(), save_opacity(), SaveDo(), and SaveNewContinuum().

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NORETURN void BadRead ( void )

BadRead tried to read internal data and failed

Definition at line 1082 of file service.cpp.

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, and ShowMe().

Referenced by diatomics::H2_Read_hminus_distribution(), and HelikeTransProbSetup().

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void broken ( void )

broken set flag saying that the code is broken

Definition at line 1163 of file service.cpp.

References broke, DEBUG_ENTRY, and t_broke::lgBroke.

Referenced by ion_solver(), and PresTotCurrent().

void cap4	(	char *	chCAP,
		const char *	chLab
	)

cap4 convert first 4 char of input line chLab into chCAP all in caps, null termination

Parameters

chCAP	output string, cap'd first 4 char of chLab,
chLab	with null terminating input string ending with eol

Definition at line 264 of file service.cpp.

References DEBUG_ENTRY, and toupper().

Referenced by lgCheckMonitors(), optimize_func(), and PrtFinal().

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void caps ( char * chCard )

caps convert input command line (through eol) to ALL CAPS

Parameters

chCard - line image as string of characters

Definition at line 304 of file service.cpp.

References DEBUG_ENTRY, and toupper().

Referenced by atmdat_STOUT_readin(), cdColm(), cdIonFrac(), cdRead(), cdTemp(), LinSv::chALabSet(), t_input::echo(), t_LineSave::findline(), lgCheckMonitors(), LinSv::makeBlend(), Parser::newlineProcess(), ParseAbundances(), ParseNorm(), ParseTable(), and PrtFinal().

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void CloudyPrintReference ( )

CloudyPrintReference print preferred citation to Cloudy

Definition at line 1890 of file service.cpp.

References fprintf(), Singleton< t_version >::Inst(), ioQQQ, mode_r, open_data(), and SafeGetline().

Referenced by PrtHeader().

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void CodeReview ( void )

CodeReview - placed next to code that needs to be checked

Definition at line 1189 of file service.cpp.

References broke, DEBUG_ENTRY, and t_broke::lgCheckit.

double csphot	(	long int	inu,
		long int	ithr,
		long int	iofset
	)

csphot returns photoionization cross section from opacity stage using std pointers

Parameters

inu	INU is array index pointing to frequency where opacity is to be evaluated on f not c scale
ithr	ITHR is pointer to threshold
iofset	IOFSET is offset as defined in opac0

Definition at line 1764 of file service.cpp.

References DEBUG_ENTRY, opac, and t_opac::OpacStack.

Referenced by OpacityAddTotal().

void DatabasePrintReference ( )

DatabasePrintReference print some database references

Definition at line 1907 of file service.cpp.

References atmdat, t_atmdat::chVersion, fprintf(), ioQQQ, mode_r, open_data(), and SafeGetline().

Referenced by PrtFinal(), and PrtHeader().

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int dbg_printf	(	int	debug,
		const char *	fmt,
			...
	)

dbg_printf is a debug print routine that was provided by Peter Teuben, as a component from his NEMO package. It offers run-time specification of the level of debugging

Definition at line 1249 of file service.cpp.

References DEBUG_ENTRY, t_trace::debug_level, ioQQQ, and trace.

int dprintf	(	FILE *	fp,
		const char *	format,
			...
	)

dprintf – version of fprintf which prepends DEBUG

Definition at line 1198 of file service.cpp.

References DEBUG_ENTRY, and fprintf().

Referenced by DumpCoolStack(), DumpHeatStack(), iso_radiative_recomb_effective(), iter_track::print_status(), qheat_init(), read_UTA_lines(), and Recomb_Seaton59().

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int dprintf	(	const Output &	stream,
		const char *	format,
			...
	)

Definition at line 1226 of file service.cpp.

References DEBUG_ENTRY, fprintf(), and Output::fptr().

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double dsexp ( double x )

dsexp safe exponential function for doubles

Parameters

x

Definition at line 1134 of file service.cpp.

References DEBUG_ENTRY, and DSEXP_LIMIT.

Referenced by FastVoigtH(), ga08_oH2_e(), ga08_oH2_H_b100(), ga08_pH2_e(), ga08_pH2_H_b100(), Hion_coll_ioniz_ratecoef(), hydro_vs_ioniz(), iso_satellite_update(), diatomics::mole_H2_LTE(), mole_partition_function(), setCollRate::operator()(), RT_continuum_shield_fcn_point(), and RT_recom_effic().

double FFmtRead	(	const char *	chCard,
		long int *	ipnt,
		long int	last,
		bool *	lgEOL
	)

FFmtRead - the free-format number reader

Parameters

*chCard	string giving the line image
*ipnt	the index for the character in the string where we shall start
last	the number of characters in the string - do not search beyond it
*lgEOL	true if hit end of line with no number

Definition at line 393 of file service.cpp.

References DEBUG_ENTRY, fprintf(), ioQQQ, max_pow10, min(), min_pow10, pos_pow10, sign(), tolower(), and TotalInsanity().

Referenced by atmdat_LAMDA_readin(), atmdat_STOUT_readin(), Badnell_rec_init(), cdRead(), ContBandsCreate(), database_readin(), dgaunt(), DrvCaseBHS(), DrvEscP(), DrvHyas(), diatomics::GetIndices(), GetStandardHeLines(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HeCollidSetup(), HelikeTransProbSetup(), HyperfineCreate(), iso_recomb_setup(), bands_file::load(), LoadIsotopes(), FunctLAMDA::operator()(), t_mesh::p_ReadResolution(), ParseAbundances(), ParseDrive(), ParseTable(), read_Helike_cross_sections(), read_SH98_He1_cross_sections(), and ReadCollisionRateTable().

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void fixit_base	(	const char *	func,
		const char *	file,
		int	line,
		const char *	reason
	)

fixit set flag saying that this code needs attention, but is not broken, code is in service.cpp

Definition at line 1172 of file service.cpp.

References broke, DEBUG_ENTRY, Singleton< FixitList >::Inst(), t_broke::lgFixit, and FixitList::list.

Referenced by Fixit::Fixit().

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int fprintf	(	const Output &	stream,
		const char *	format,
			...
	)

overloads to allow interception of output

Definition at line 1217 of file service.cpp.

References Output::fptr().

Referenced by AbortErrorMessage(), abund_starburst(), AbundancesPrt(), AbundancesSet(), AbundancesTable(), t_PredCont::add(), addComment(), LinSv::addComponent(), addKeyword_num(), addKeyword_txt(), AGN_He1_CS(), AGN_Hemis(), AtlasCompile(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_LAMDA_readin(), atmdat_outer_shell(), atmdat_readin(), atmdat_STOUT_readin(), AtmospheresAvail(), AulTTError(), Badnell_rec_init(), badprt(), BadRead(), t_warnings::bangin(), bessel_y0(), bessel_y1(), bessel_yn(), C6cs123(), Ca20cs123(), t_warnings::caunin(), cdCautions(), cdClock(), cdColm(), cdDrive(), cdErrors(), cdExecTime(), cdGetLineList(), cdH2_colden(), cdInit(), cdIonFrac(), cdLine_ip(), cdMain(), cdMemory(), cdNotes(), cdPrepareExit(), cdPrintCommands(), cdRead(), cdReasonGeo(), cdSPEC(), cdSPEC2(), cdSurprises(), cdTemp(), cdWarnings(), ChargTranPun(), ChargTranSumHeat(), check_data(), pseudo_cont::check_index_fatal(), species_bands::check_index_fatal(), check_LAMDA_comment(), check_mult_path(), t_mesh::CheckMesh(), CheckVal(), t_mole_local::chem_heat(), ChemImportance(), chi2_func(), CHIANTI_Upsilon(), chkCaHeps(), chMolBranch(), CloseSaveFiles(), cloudy(), CloudyPrintReference(), cnewton(), t_ADfA::coll_ion_wrapper(), collectSkipTrans(), collision_strength_VF01(), CollisSuppres(), Parser::CommandError(), conorm(), ContBandsCreate(), ContCreateMesh(), ContCreatePointers(), ContNegative(), ContRate(), ContSetIntensity(), ConvBase(), ConvCrossSect2CollStr(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvIoniz(), ConvIterCheck(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolEvaluate(), CoolHeatError(), CoolHyperfine(), coolpr(), CoolSave(), CoolSum(), CoStarCompile(), CoStarInitialize(), CoStarListModels(), CS_l_mixing(), database_readin(), DatabasePrintReference(), dBase_solve(), dBaseAbund(), dgaunt(), dgaunt_check(), dmpary(), do_dump_state(), do_restore_state(), doData(), DoFSMixing(), doHeader(), doop(), Parser::doSetVar(), dprintf(), Drive_cdLine(), DrivePump(), DrvCaseBHS(), DrvEscP(), DrvHyas(), DumpAtmosphere(), DumpLine(), DynaEndZone(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaNewStep(), DynaPrtZone(), DynaPunchTimeDep(), DynaSave(), DynaStartZone(), e1(), e1_scaled(), e2(), t_input::echo(), Parser::echo(), eden_sum(), EdenError(), ElectronFractions(), ellpk(), t_debug::enter(), Parser::Error(), escmase(), expn(), factorial(), fc2_scl(), Fe26cs123(), Parser::FFmtRead(), FFmtRead(), ffun(), ffun1(), FillExtraLymanLine(), FillJ(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fndneg(), fndstr(), fudge(), funjac(), GammaPrt(), GammaPrtRate(), GammaPrtShells(), gauss_legendre(), Energy::get(), get_total_abundance_ions(), GetBins(), Parser::getFirstChunk(), GetFracPop(), GetHelikeCollisionStrength(), band_cont::getInten(), getLevelsGeneric(), Parser::getLineID(), GetLineRec(), GetModel(), GetNextLine(), Parser::getNumberCheckAlwaysLogLim(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), GetPotValues(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), GetQuote(), getSpecies(), GetStandardHeLines(), Parser::getSymbol(), diatomics::GetXColden(), GrainCharge(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainsInit(), GrainTemperature(), GravitationalPressure(), grid_do(), GridCompile(), gridXspec(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), diatomics::H2_Colden(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_CollidRateRead(), diatomics::H2_Cooling(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_ParseSave(), diatomics::H2_Prt_column_density(), diatomics::H2_Prt_Zone(), diatomics::H2_PrtDepartCoef(), diatomics::H2_Punch_line_data(), diatomics::H2_PunchDo(), diatomics::H2_RadPress(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), diatomics::H2_Reset(), diatomics::H2_X_coll_rate_evaluate(), H_Einstein_A_lin(), H_Einstein_A_log10(), H_photo_cs_lin(), H_photo_cs_log10(), HCSAR_interp(), HCTIon(), HCTRecom(), He2cs123(), he_1trans(), HeatSum(), HeCollidSetup(), HelikeTransProbSetup(), Parser::help(), highen(), HomogeneousSource(), t_ADfA::hpfit(), hv(), Hydcs123(), HydroEinstA(), HydroLevel(), HydroRecCool(), HyperfineCreate(), hypho(), IncidentContinuumHere(), load_balance::init(), diatomics::init(), t_mole_global::init(), t_yield::init_yield(), InitEmissivities(), InitGrid(), InitGridASCII(), InitGridBin(), InitSimPostparse(), input_readvector(), InterpolateGridCoStar(), InterpolateModel(), InterpolateModelCoStar(), InterpolateRectGrid(), inv_ufunct(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_trim(), ion_trim2(), ion_wrapper(), IonHelium(), IonHydro(), IonNelem(), ipContEnergy(), ipLineEnergy(), ipoint(), ipShells(), iso_cascade(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_get_collision_strength(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_recomb_setup(), iso_renorm(), iso_set_ion_rates(), iso_solve(), iso_update_num_levels(), iter_end_check(), IterEnd(), IterRestart(), IterStart(), Kurucz79Compile(), t_debug::leave(), lfactorial(), lgCheckMonitors(), lgCompileAtmosphere(), lgConserveEnergy(), lgConvTemp(), lgCoolNetConverge(), lgElemsConserved(), lgNetEdenSrcSmall(), lgNucleiConserved(), lgOptimize_do(), lgReactBalance(), lgReadAtmosphereHead(), lgReadAtmosphereTail(), lgStatesConserved(), lgValidModel(), LimitSh(), lindst(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_iron_Ka(), lines_table(), LineStackCreate(), bands_file::load(), LoadIsotopes(), LinSv::makeBlend(), map_do(), maybeNumber(), mc_escape(), t_mean::MeanIon(), mie_auxiliary(), mie_auxiliary2(), mie_cs(), mie_cs_size_distr(), mie_find_slope(), mie_next_line(), mie_read_double(), mie_read_long(), mie_read_mix(), mie_read_opc(), mie_read_realnum(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_step(), mie_write_opc(), MihalasCompile(), molcol(), mole_check_reverse_reactions(), mole_cmp_num_in_out_reactions(), mole_create_react(), mole_dominant_rates(), mole_eval_balance(), mole_generate_isotopologue_reactions(), mole_h2_grain_form(), diatomics::mole_H2_LTE(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_print_species_reactions(), mole_rk_bigchange(), mole_save(), mole_solve(), mole_system_error(), mole_update_rks(), mole_update_species_cache(), my_Integrand_VF01_E< P >::my_Integrand_VF01_E(), MyAssert(), MyMalloc_base(), Ne10cs123(), newreact(), newspecies(), newton_step(), Parser::NoNumb(), t_warnings::notein(), opacity_more_memory(), OpacityAddTotal(), OpacityCreate1Element(), OpacityCreateAll(), OpacityCreateReilMan(), setCollRate::operator()(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), optimize_func(), optimize_phymir(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), Flux::p_InternalFluxUnit(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), t_mesh::p_SetupMesh(), parse_reaction(), parse_save_average(), parse_save_line(), Parse_Save_Line_RT(), parse_species_label(), parse_udfa(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosm(), ParseCosmicRays(), ParseCosmology(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDrive(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFail(), ParseFill(), ParseFluc(), ParseForceTemperature(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHExtra(), ParseHydrogen(), ParseIlluminate(), ParseInit(), ParseInitCount(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePlot(), ParsePlotRangeContin(), ParsePlotRangeOption(), ParsePowerlawContinuum(), ParsePrint(), ParsePrtLineSum(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecies(), ParseSphere(), ParseState(), ParseStop(), ParseTable(), ParseTest(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PlanckIntegral(), plot(), plot_sparsity(), pltcon(), pltmap(), pltopc(), pltr(), pnegopc(), PntForLine(), PressureChange(), PresTotCurrent(), bad_assert::print(), print_delimiter(), print_emline_fine(), iter_track::print_history(), PrintCenterLine(), t_cpu_i::printDataPath(), PrintE71(), PrintE82(), PrintE93(), Parser::PrintLine(), PrintLineDataHeader(), PrintRates(), PrintRatio(), PrintShortZero(), PrintSpectrum(), prme(), process_output(), LinSv::prt(), t_physconst::prt_constants(), prt_constants(), prt_line_err(), prt_line_inlist(), prt_LineLabels(), prt_smooth_predictions(), prt_trans_opc_debug(), prt_wl(), PrtAllTau(), PrtColumns(), PrtComment(), PrtElem(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), isotope::prtIso(), isotope::prtIsoPairs(), PrtLinePres(), PrtLineSum(), prtLineType(), PrtMacros(), PrtMeanIon(), prtmet(), PrtOneMonitor(), prtPunOpacSummary(), t_prt_matrix::prtRates(), PrtTwoPhotonEmissCoef(), PrtZone(), punchFITS_EnergyHeader(), punchFITS_GenericHeader(), punchFITS_ParamData(), punchFITS_ParamHeader(), punchFITS_PrimaryHeader(), punchFITS_SpectraData(), punchFITS_SpectraHeader(), qheat(), qintr(), r1mach(), t_ADfA::rad_rec(), radius_first(), radius_increment(), radius_next(), RauchCompile(), RauchInitialize(), RauchReadMPP(), read_data(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), read_whole_line(), t_input::readarray(), ReadAugerData(), ReadBadnellAIData(), Parser::readLaw(), Parser::readList(), ReadTable(), RebinQHeatResults(), rec6j(), t_conv::register_(), renorm_solution(), RT_continuum(), RT_continuum_shield_fcn(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_line_escape(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_line_one_tauinc(), RT_line_pumping(), RT_OTS(), RT_OTS_AddLine(), RT_OTS_ChkSum(), RT_OTS_PrtRate(), RT_recom_effic(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), RTesc_lya_1side(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), Save1Line(), Save1LineData(), save_average(), save_line(), Save_Line_RT(), save_opacity(), SaveAllSpeciesLabelsLevels(), SaveDo(), saveFITSfile(), SaveGaunts(), SaveGrid(), SaveHeat(), SaveLineData(), SaveLineIntensity(), SaveLineStuff(), SaveNewContinuum(), SaveResults(), SaveSpecial(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesHeader(), SaveSpeciesLines(), SaveSpeciesOne(), SaveSpeciesOptDep(), SaveSpeciesPseudoCont(), ScaleAllDensities(), ScanProbDistr(), search_limit(), SecIoniz(), Energy::set(), set_xIntensity(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), GroupMap::setup(), setXtraRatesO1(), ShowMe(), size_distr(), solve_system(), diatomics::SolveExcitedElectronicLevels(), solveions(), speciesCheck(), speciesOff(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StarburstCompile(), StarburstInitialize(), state_do(), state_get_put(), states_nelemfill(), stepDensity(), StoutCollRate(), StuffComment(), pseudo_cont::sumBand(), species_bands::sumBand(), SumDensities(), t_ADfA::t_ADfA(), t_physconst::t_physconst(), t_version::t_version(), DepthTable::tabval(), TempChange(), TempInterp(), test_expn(), tfidle(), timestep_next(), TlustyCompile(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), UpdatePot(), UpdateUTAs(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), ValidateGrid(), ValidateMesh(), vary_input(), t_warnings::warnin(), WernerCompile(), WMBASICCompile(), WriteASCIIData(), WriteASCIIHead(), XERBLA(), xerror_(), y0b01(), Yfunc(), zero(), t_abund::zero(), zoneDensity(), and ZoneStart().

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double fudge ( long int ipnt )

fudge enter fudge factors, or some arbitrary number, with fudge command return value is the fudge factor fudge(-1) queries the routine for the number of fudge parameters that were entered, zero returned if none

Parameters

ipnt	integer saying which of the possible numbers on the fudge command to use - 0 would be the first

Definition at line 567 of file service.cpp.

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), t_fudgec::fudgea, fudgec, ioQQQ, t_fudgec::lgFudgeUsed, and t_fudgec::nfudge.

Referenced by GrainChargeTemp(), InitEmissivities(), and PresTotCurrent().

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int GetQuote	(	char *	chLabel,
		char *	chCard,
		char *	chCardRaw,
		bool	lgABORT
	)

GetQuote get any name between double quotes off command line

return string as chLabel, is null terminated returns zero for success, 1 for did not find double quotes

Parameters

*chLabel	null terminated string between quotes
*chCard	input line, imagae, we set string between quotes to spaces
lgABORT	if true then abort if no double quotes found, if false then return null string in this case,

Returns: 0 if found double quotes, 1 if did not, string between quotes set to spaces

Definition at line 599 of file service.cpp.

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, strchr_s(), and TotalInsanity().

Referenced by cdRead().

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long ipow	(	long	,
		long
	)

ipow

Returns: m^n

Definition at line 754 of file service.cpp.

References DEBUG_ENTRY, and is_odd().

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void MyAssert	(	const char *	file,
		int	line,
		const char *	comment
	)

MyAssert a version of assert that fails gracefully

Parameters

*file
line

Definition at line 177 of file service.cpp.

References cdEXIT, conv, DEBUG_ENTRY, EXIT_FAILURE, fnzone, fprintf(), ioQQQ, iteration, t_conv::lgSearch, nzone, ShowMe(), and TorF().

Referenced by cdMain().

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double MyGaussRand ( double PctUncertainty )

A custom wrapper for RandGauss than truncates at two standard deviations.

Parameters

PctUncertainty

Definition at line 1845 of file service.cpp.

References ASSERT, DEBUG_ENTRY, and RandGauss().

Referenced by iso_error_generation().

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void* MyMalloc	(	size_t	size,
		const char *	file,
		int	line
	)

MyMalloc wrapper for malloc(). Returns a good pointer or dies.

Parameters

size	use same type as library function malloc
file
line

Definition at line 1739 of file service.cpp.

References ASSERT, and MyMalloc_base().

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void* MyMalloc_avx	(	size_t	size,
		const char *	file,
		int	line
	)

MyMalloc_avx - same as MyMalloc, but returned memory is aligned on AVX / AVX512 size boundary

Definition at line 1750 of file service.cpp.

References ASSERT, CD_ALIGN, and MyMalloc_base().

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STATIC void MyMalloc_base	(	void *	ptr,
		size_t	size,
		const char *	chFile,
		int	line
	)

Definition at line 1666 of file service.cpp.

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, t_struc::nzlim, set_NaN(), and struc.

Referenced by MyMalloc(), and MyMalloc_avx().

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long nMatch	(	const char *	chKey,
		const char *	chCard
	)

nMatch determine whether match to a keyword occurs on command line, return value is 0 if no match, and position of match within string if hit

Parameters

*chKey
*chCard

Definition at line 537 of file service.cpp.

References ASSERT, DEBUG_ENTRY, and strstr_s().

Referenced by atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), Badnell_rec_init(), cdRead(), t_input::echo(), mie_read_mix(), mie_read_rfi(), mie_read_szd(), Parser::nMatch1(), ParseAbundances(), ParseGrain(), ParseTable(), PrtFinal(), StandardEnergyUnit(), StandardFluxUnit(), and vary_input().

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double plankf ( long int ip )

plankf evaluate Planck function for any cell at current electron temperature

Parameters

ip

Definition at line 1869 of file service.cpp.

References t_mesh::anu(), t_rfield::ContBoltz, DEBUG_ENTRY, POW2, and rfield.

Referenced by SaveDo().

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double powi	(	double	,
		long	int
	)

powi raise x to integer power

Definition at line 690 of file service.cpp.

References DEBUG_ENTRY, and is_odd().

Referenced by add_mx(), atmdat_STOUT_readin(), bessel_jn(), bhG(), bhg(), CollisSuppres(), ContCreatePointers(), CS_PercivalRichards78(), DebyeDeriv(), expn(), F21i_log(), fsff(), GrainCharge(), t_ADfA::H_rad_rec(), highen(), Hion_coll_ioniz_ratecoef(), hrii(), hrii_log(), hydro_transprob(), HydroRecCool(), InitEmissivities(), iso_rad_rec_cooling_extra(), iso_state_lifetime(), MolDissocCrossSection(), ParseBackgrd(), PlanckIntegral(), pow(), powpq(), PrtComment(), rayleh(), SaveSpecial(), setXtraRatesFe2(), size_distr(), and unmxify().

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double powpq	(	double	x,
		int	p,
		int	q
	)

powpq raise x to rational power p/q

Definition at line 726 of file service.cpp.

References DEBUG_ENTRY, pow(), and powi().

Referenced by atmdat_dielrec_fe(), ContSetIntensity(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), CS_l_mixing_VOS12(), da(), eeBremsCooling(), eeBremsSpectrum(), elec_esc_length(), ffun1(), GetHelikeCollisionStrength(), GrainScreen(), GrainsInit(), H21cm_electron(), he_1trans(), Hydcs123(), hydro_vs_coll_str(), hydro_vs_deexcit(), hydro_vs_ioniz(), ion_recom_calculate(), iso_collide(), iso_continuum_lower(), iso_get_collision_strength(), iso_radrecomb_from_cross_section(), iso_satellite_update(), lgCheckMonitors(), lgValidModel(), mole_partition_function(), my_Integrand_VF01_E< P >::my_Integrand_VF01_E(), OpacityCreateAll(), PrtZone(), qheat_init(), t_ADfA::rec_lines(), Recomb_Seaton59(), RT_stark(), X1Int(), X2Int(), and Yan_H2_CS().

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void PrintE71	(	FILE *	,
		double
	)

print with 1p,e8.1 format onto stream FILE

Definition at line 969 of file service.cpp.

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by PrtFinal().

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void PrintE82	(	FILE *	,
		double
	)

print with 1p,e8.2 format onto stream FILE all are located in printe82.c

Definition at line 920 of file service.cpp.

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by AbundancesSet(), IonHydro(), PrtAllTau(), PrtFinal(), and PrtHeader().

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void PrintE93	(	FILE *	,
		double
	)

print with 1p,e9.3 format onto stream FILE

Definition at line 1019 of file service.cpp.

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by HydroLevel(), PrtAllTau(), PrtFinal(), PrtHeader(), PrtHydroTrace1a(), PrtZone(), and save_opacity().

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double qg32	(	double	,
		double	,
		double(*)(double)
	)

32 point gaussian quadrature integration

Parameters

xl	lower limit to integration
xu	- upper limit to integration
(*fct)	- pointer to routine to be integrated, arg is x val

Definition at line 1271 of file service.cpp.

References DEBUG_ENTRY.

Referenced by AngerJ(), CS_ThermAve_PR78(), iso_radrecomb_from_cross_section(), Recomb_Seaton59(), and SanityCheckBegin().

double RandGauss	(	double	xMean,
		double	s
	)

normal random variate generator

Parameters

xMean	mean value
s	standard deviation s

Definition at line 1805 of file service.cpp.

References BIGDOUBLE, DEBUG_ENTRY, genrand_real3(), x1, and x2.

Referenced by Badnell_rec_init(), diatomics::init(), mc_escape(), and MyGaussRand().

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char* read_whole_line	(	char *	chLine,
		int	nChar,
		FILE *	ioIN
	)

read_whole_line safe version of fgets - read a line, return null if cannot read line or if input line is too long

Parameters

char	*chLine - previously allocated string where the line image will be stored
int	nChar size of chLine, we will return NULL if input line is longer than this
FILE	*ioIN a previously opened file handle, will read from from here

Definition at line 72 of file service.cpp.

References called, DEBUG_ENTRY, fprintf(), ioQQQ, lgAbort, and t_called::lgTalk.

Referenced by atmdat_LAMDA_readin(), atmdat_STOUT_readin(), Badnell_rec_init(), cdGetLineList(), cdMain(), ContBandsCreate(), CoStarInitialize(), database_readin(), dgaunt(), DrvCaseBHS(), DrvEscP(), DrvHyas(), GetNextLine(), GetStandardHeLines(), diatomics::H2_CollidRateRead(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HeCollidSetup(), HelikeTransProbSetup(), HyperfineCreate(), t_yield::init_yield(), iso_recomb_setup(), lgReadAtmosphereHead(), bands_file::load(), LoadIsotopes(), mie_next_line(), t_mesh::p_ReadResolution(), ParseAbundances(), ParseDrive(), ParseInit(), ParseTable(), RauchInitialize(), read_data_line(), read_Helike_cross_sections(), read_level2_lines(), read_mewe_gbar(), diatomics::Read_Mol_Diss_cross_sections(), read_SH98_He1_cross_sections(), read_UTA_lines(), ReadCollisionRateTable(), ReadTable(), StarburstInitialize(), validate_magic_number_1arg(), and validate_magic_number_3arg().

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istream& SafeGetline	(	istream &	is,
		string &	t
	)

Definition at line 1932 of file service.cpp.

Referenced by CloudyPrintReference(), and DatabasePrintReference().

sys_float sexp ( sys_float x )

sexp safe exponential function

Definition at line 1095 of file service.cpp.

References DEBUG_ENTRY, and SEXP_LIMIT.

Referenced by atmdat_dielrec_fe(), atom_level2(), Badnell_DR_rate_eval(), ChargTranEval(), ColStrGBar(), extin(), ffun1(), GetAveVelocity(), t_rfield::getCoarseTransCoef(), GetDopplerWidth(), GrnStdDpth(), H21_cm_pops(), H21cm_electron(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_LevelPops(), H2_vib_dist(), HCTRecom(), highen(), hmrate4(), diatomics::init(), ion_recom_calculate(), IterEnd(), IterRestart(), IterStart(), lines_continuum(), mole_h2_grain_form(), mole_h_reactions(), ParseAgn(), ParseDrive(), PrtFinal(), RT_continuum(), SaveDo(), and shieldFederman().

double sexp ( double x )

Definition at line 1114 of file service.cpp.

References DEBUG_ENTRY, and SEXP_LIMIT.

void ShowMe ( void )

print comment asking to show output to me

Definition at line 205 of file service.cpp.

References cdCautions(), cdPrintCommands(), cdWarnings(), conv, t_hextra::cryden, DEBUG_ENTRY, findspecieslocal(), fprintf(), h2, hextra, input, Singleton< t_version >::Inst(), ioQQQ, t_warnings::ncaun, t_input::nSaveIni, t_conv::nTeFail, t_warnings::nwarn, warnings, and molezone::xFracLim.

Referenced by BadRead(), cloudy(), cnewton(), ContSetIntensity(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvTempEdenIoniz(), CoolEvaluate(), coolpr(), escmase(), GetFracPop(), GrainCharge(), diatomics::H2_ReadTransprob(), HeatSum(), ipoint(), iso_level(), iso_radiative_recomb(), iter_end_check(), lgCheckMonitors(), lines(), mie_auxiliary(), mie_auxiliary2(), mie_cs_size_distr(), mie_read_mix(), mie_read_rfi(), mie_repair(), mie_write_opc(), MyAssert(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), radius_first(), RT_continuum(), RT_line_escape(), RT_tau_init(), SanityCheckBegin(), SaveDo(), size_distr(), TotalInsanity(), t_abund::zero(), and zoneDensity().

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size_t sncatf	(	char *	buf,
		size_t	bufSize,
		const char *	fmt,
			...
	)

Definition at line 812 of file service.cpp.

References strnlen().

Referenced by diatomics::H2_ParseSave(), parse_save_average(), parse_save_line(), and ParseSave().

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size_t sncatf	(	ostringstream &	str,
		const char *	fmt,
			...
	)

Definition at line 825 of file service.cpp.

References DEBUG_ENTRY.

void Split	(	const string &	str,
		const string &	sep,
		vector< string > &	lst,
		split_mode	mode
	)

Split: split a string into substrings using "sep" as separator

Definition at line 108 of file service.cpp.

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, SPM_KEEP_EMPTY, and SPM_STRICT.

Referenced by HyperfineCreate(), t_cpu_i::t_cpu_i(), and t_version::t_version().

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void spsort	(	realnum	x[],
		long int	n,
		long int	iperm[],
		int	kflag,
		int *	ier
	)

spsort netlib routine to sort array returning sorted indices

Parameters

x[]	input array to be sorted
n	number of values in x
iperm[]	permutation output array
kflag	flag saying what to do - 1 sorts into increasing order, not changing
kflag	the original routine
*ier	error condition, should be 0