prt_zone.cpp

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/* This file is part of Cloudy and is copyright (C)1978-2017 by Gary J. Ferland and
 * others.  For conditions of distribution and use see copyright notice in license.txt */
/*PrtZone print out individual zone results, call by iter_end_check at very
 * end of zone calculations */
#include "cddefines.h"
#include "iso.h"
#include "grainvar.h"
#include "pressure.h"
#include "wind.h"
#include "conv.h"
#include "trace.h"
#include "magnetic.h"
#include "called.h"
#include "dynamics.h"
#include "h2.h"
#include "secondaries.h"
#include "opacity.h"
#include "geometry.h"
#include "hmi.h"
#include "thermal.h"
#include "radius.h"
#include "phycon.h"
#include "abund.h"
#include "hydrogenic.h"
#include "ionbal.h"
#include "elementnames.h"
#include "prt.h"
#include "deuterium.h"
#include "mole.h"
#include "rfield.h"
#include "freebound.h"
#include "dense.h"

void PrtZone(void)
{
        char chField7[8];
        char chLet, 
          chQHMark;
        long int i, 
          ishift, 
          nelem ,
          mol;

        DEBUG_ENTRY( "PrtZone()" );

        if( thermal.lgUnstable )
        {
                chLet = 'u';
        }
        else
        {
                chLet = ' ';
        }

        /* middle of zone for printing
        rmidle = radius.Radius - radius.drad*0.5*radius.dRadSign;
        dmidle = radius.depth - radius.drad*0.5; */

        /* option to print single line when quiet but tracing convergence
         * with "trace convergence" command */
        if( called.lgTalk || trace.nTrConvg )
        {
                /* print either ####123 or ###1234 */
                if( nzone <= 999 )
                {
                        sprintf( chField7, "####%3ld", nzone );
                }
                else
                {
                        sprintf( chField7, "###%4ld", nzone );
                }

                fprintf(ioQQQ, " %7.7s %cTe:",chField7, chLet);
                PrintE93(ioQQQ,phycon.te);
                fprintf(ioQQQ," Hden:");
                PrintE93(ioQQQ,dense.gas_phase[ipHYDROGEN]);
                fprintf(ioQQQ," Ne:");
                PrintE93(ioQQQ,dense.eden);
                fprintf(ioQQQ," R:");
                PrintE93(ioQQQ,radius.Radius_mid_zone );
                fprintf(ioQQQ," R-R0:");
                PrintE93(ioQQQ,radius.depth_mid_zone);
                fprintf(ioQQQ," dR:");
                PrintE93(ioQQQ,radius.drad);
                fprintf(ioQQQ," NTR:%3ld Htot:",conv.nPres2Ioniz);
                PrintE93(ioQQQ,thermal.htot);
                fprintf(ioQQQ," T912:");
                fprintf(ioQQQ,PrintEfmt("%9.2e",opac.TauAbsGeo[0][iso_sp[ipH_LIKE][ipHYDROGEN].fb[ipH1s].ipIsoLevNIonCon-1] ));
                fprintf(ioQQQ,"###\n");

                if( trace.nTrConvg )
                {
                        fprintf( ioQQQ, " H:%.2e %.2e 2H2/H: %.2e He: %.2e %.2e %.2e\n", 
                          dense.xIonDense[ipHYDROGEN][0]/dense.gas_phase[ipHYDROGEN], 
                          dense.xIonDense[ipHYDROGEN][1]/dense.gas_phase[ipHYDROGEN], 
                          2.*hmi.H2_total/dense.gas_phase[ipHYDROGEN],
                          dense.xIonDense[ipHELIUM][0]/SDIV(dense.gas_phase[ipHELIUM]), 
                          dense.xIonDense[ipHELIUM][1]/SDIV(dense.gas_phase[ipHELIUM]), 
                          dense.xIonDense[ipHELIUM][2]/SDIV(dense.gas_phase[ipHELIUM])
                          );
                }
        }

        /* now return if not talking */
        if( !called.lgTalk && !trace.nTrConvg )
        { 
                return;
        }

        /* lgDenFlucOn set to true in zero, only false when variable abundances are on,
         * lgAbTaON set true when element table used */
        if( !dense.lgDenFlucOn || abund.lgAbTaON )
        {
                fprintf( ioQQQ, " Abun:" );
                for( i=0; i < LIMELM; i++ )
                {
                        fprintf( ioQQQ,PrintEfmt("%8.1e", dense.gas_phase[i] ));
                }
                fprintf( ioQQQ, "\n" );
        }

        /*-------------------------------------------------
         * print wind parameters if windy model */
        if( !wind.lgStatic() )
        {
                double fac;
                /* find denominator for fractional contributions */
                if( wind.AccelTotalOutward == 0. )
                        fac = 1.;
                else
                        fac = wind.AccelTotalOutward;
                fprintf( ioQQQ, 
                        " Dynamics wind V:%.3e km/s a(grav):%.2e a(tot):%.2e Fr(cont):%6.3f "
                        "Fr(line):%6.3f \n",
                        wind.windv/1e5 ,
                        -wind.AccelGravity,
                        wind.AccelTotalOutward,
                        wind.AccelCont/ fac, 
                        wind.AccelLine/fac );

                /* print advection information */
                if( dynamics.lgAdvection || dynamics.lgTimeDependentStatic )
                        DynaPrtZone();
        }

        /* print line with radiation pressure if significant */
        if( pressure.pbeta > .05 )
                PrtLinePres(ioQQQ);

        // report fraction of total H in form of H^0 and H^+
        double hatmic = 0.;
        count_ptr<chem_nuclide> elHydrogen = findnuclide("H");
        for(mol = 0; mol < mole_global.num_calc; mol++) {
                if (mole_global.list[mol]->isIsotopicTotalSpecies() && mole_global.list[mol]->nNuclide.find(elHydrogen) !=
                         mole_global.list[mol]->nNuclide.end())
                        hatmic += mole.species[mol].den*mole_global.list[mol]->nNuclide[elHydrogen];
        }
        ASSERT(hatmic > 0.);
        hatmic = (dense.xIonDense[ipHYDROGEN][0] + dense.xIonDense[ipHYDROGEN][1])/hatmic;

        fprintf( ioQQQ, " Hydrogen     ");
        fprintf(ioQQQ,PrintEfmt("%9.2e",dense.xIonDense[ipHYDROGEN][0]/dense.gas_phase[ipHYDROGEN]));
        fprintf(ioQQQ,PrintEfmt("%9.2e",dense.xIonDense[ipHYDROGEN][1]/dense.gas_phase[ipHYDROGEN]));
        fprintf( ioQQQ, " H+o/Hden");
        fprintf(ioQQQ,PrintEfmt("%9.2e",hatmic ));
        fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("H-")->den/dense.gas_phase[ipHYDROGEN] ));
        fprintf( ioQQQ, " H-    H2");
        /* this is total H2, the sum of "ground" and excited */
        fprintf(ioQQQ,PrintEfmt("%9.2e",hmi.H2_total/dense.gas_phase[ipHYDROGEN]));
        fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("H2+")->den/dense.gas_phase[ipHYDROGEN]));
        fprintf( ioQQQ, " H2+ HeH+");
        fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("HeH+")->den/dense.gas_phase[ipHYDROGEN]));
        fprintf( ioQQQ, " Ho+ ColD");
        fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("H")->column));
        fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("H+")->column));
        fprintf( ioQQQ, "\n");

        /* print departure coef if desired */
        if( iso_sp[ipH_LIKE][ipHYDROGEN].lgPrtDepartCoef )
        {
                fprintf( ioQQQ, " Hydrogen     " );
                fprintf(ioQQQ,PrintEfmt("%9.2e",  iso_sp[ipH_LIKE][ipHYDROGEN].st[ipH1s].DepartCoef()));
                fprintf(ioQQQ,PrintEfmt("%9.2e",  1.));
                fprintf( ioQQQ, " H+o/Hden");
                fprintf(ioQQQ,PrintEfmt("%9.2e", (dense.xIonDense[ipHYDROGEN][0] + dense.xIonDense[ipHYDROGEN][1])/dense.gas_phase[ipHYDROGEN]));
                fprintf(ioQQQ,PrintEfmt("%9.2e", hmi.hmidep));
                fprintf( ioQQQ, " H-    H2");
                fprintf(ioQQQ,PrintEfmt("%9.2e", hmi.h2dep));
                fprintf( ioQQQ, "      H2+");
                fprintf(ioQQQ,PrintEfmt("%9.2e", hmi.h2pdep));
                fprintf( ioQQQ, "      H3+");
                fprintf(ioQQQ,PrintEfmt("%9.2e",hmi.h3pdep));
                fprintf( ioQQQ, "\n" );
        }

        if( deut.lgElmtOn )
        {
                fprintf( ioQQQ, " Deuterium    ");
                fprintf(ioQQQ,PrintEfmt("%9.2e",deut.xIonDense[0]/deut.gas_phase));
                fprintf(ioQQQ,PrintEfmt("%9.2e",deut.xIonDense[1]/deut.gas_phase));
                fprintf( ioQQQ, " D+o/Dden");
                fprintf(ioQQQ,PrintEfmt("%9.2e",(deut.xIonDense[0] + deut.xIonDense[1])/deut.gas_phase));
                fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("D-")->den/deut.gas_phase));
                fprintf( ioQQQ, " D-    HD");
                fprintf(ioQQQ,PrintEfmt("%9.2e",hmi.HD_total/deut.gas_phase));
                fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("HD+")->den/deut.gas_phase));
                fprintf( ioQQQ, " HD+ HeD+");
                fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("HeD+")->den/deut.gas_phase));
                fprintf( ioQQQ, " Do+ ColD");
                fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("D")->column));
                fprintf(ioQQQ,PrintEfmt("%9.2e",findspecieslocal("D+")->column));
                fprintf( ioQQQ, "\n");
        }

        fixit("add a command line option to activate this");
        // print departure coefficients for diatoms species
        for( diatom_iter diatom = diatoms.begin(); diatom != diatoms.end(); ++diatom )
        {
                if( 0 )
                        (*diatom)->H2_PrtDepartCoef();
        }

        if( prt.lgPrintHeating )
        {
                fprintf( ioQQQ, "              ");
                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,0)/thermal.htot));
                fprintf( ioQQQ,"         ");
                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,15)/thermal.htot));
                fprintf( ioQQQ,"         ");
                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,16)/thermal.htot));
                fprintf( ioQQQ,"\n");
        }

        /* convert energy flux [erg cm-2 s-1] in attenuated incident continuum, 
         * diffuse emission, into equivalent temperature */
        double TconTot = powpq((rfield.EnergyIncidCont+rfield.EnergyDiffCont)/(4.*STEFAN_BOLTZ),1,4);
        double Tincid = powpq(rfield.EnergyIncidCont/(4.*STEFAN_BOLTZ),1,4);
        double Tdiff = powpq(rfield.EnergyDiffCont/(4.*STEFAN_BOLTZ),1,4);

        /* convert sum of flux into energy density, then equivalent pressure */
        double Pcon_nT = (Tincid + Tdiff) / SPEEDLIGHT;
        Pcon_nT /= BOLTZMANN;

        if( prt.lgPrintHeating )
        {
                fprintf( ioQQQ, "              ");
                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,1)/thermal.htot ));
                fprintf( ioQQQ, "         ");
                fprintf(ioQQQ,PrintEfmt("%9.2e", 0. ));
                fprintf( ioQQQ, " BoundCom");
                fprintf(ioQQQ,PrintEfmt("%9.2e", ionbal.CompRecoilHeatLocal/ thermal.htot));
                fprintf( ioQQQ, "   Extra:");
                fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(0,20)/thermal.htot));
                fprintf( ioQQQ, "   Pairs:");
                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,21)/ thermal.htot ));
                fprintf( ioQQQ,"  H-lines\n");
        }

        /* Helium */
        if( dense.lgElmtOn[ipHELIUM] )
        {
                fprintf( ioQQQ, " Helium       " );
                for( i=0; i < 3; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[ipHELIUM][i]/dense.gas_phase[ipHELIUM]) );
                }

                fprintf( ioQQQ, " HeI 2s3S");
                fprintf(ioQQQ,PrintEfmt("%9.2e", 
                        iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2s3S].Pop()/dense.gas_phase[ipHELIUM] ));
                fprintf( ioQQQ, " Comp H,C");
                fprintf(ioQQQ,PrintEfmt("%9.2e", rfield.cmheat ));
                fprintf(ioQQQ,PrintEfmt("%9.2e",  rfield.cmcool*phycon.te));
                fprintf( ioQQQ , " Fill Fac");
                fprintf(ioQQQ,PrintEfmt("%9.2e", geometry.FillFac));
                fprintf( ioQQQ , " Gam1/tot");
                fprintf(ioQQQ,PrintEfmt("%9.2e", hydro.H_ion_frac_photo));
                fprintf( ioQQQ, "\n");

                /* option to print departure coef */
                if( iso_sp[ipH_LIKE][ipHELIUM].lgPrtDepartCoef )
                {
                        fprintf( ioQQQ, " Helium       " );
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[0].DepartCoef()));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipH_LIKE][ipHELIUM].st[ipH1s].DepartCoef()));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", 1.));

                        fprintf( ioQQQ, " Comp H,C");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", rfield.cmheat ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", rfield.cmcool*phycon.te ));
                        fprintf( ioQQQ , " Fill Fac");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", geometry.FillFac ));
                        fprintf( ioQQQ , " Gam1/tot");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", hydro.H_ion_frac_photo));
                        fprintf( ioQQQ, "\n");
                }

                /* print heating from He (and others) if desired
                 * entry "lines" is induced line heating
                 * 1,12 ffheat:  2,3 he triplets, 1,20 compton */
                if( prt.lgPrintHeating )
                {
                        /*fprintf( ioQQQ, "            %10.3e%10.3e    Lines:%10.2e%10.2e  Compton:%10.3e FF Heatig%10.3e\n", 
                          thermal.heating(1,0)/thermal.htot, thermal.heating(1,1)/
                          thermal.htot, thermal.heating(0,22)/thermal.htot, thermal.heating(1,2)/
                          thermal.htot, thermal.heating(0,19)/thermal.htot, thermal.heating(0,11)/
                          thermal.htot );*/
                        fprintf( ioQQQ, "              ");
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(1,0)/thermal.htot));
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(1,1)/thermal.htot));
                        fprintf( ioQQQ, "   Lines:");
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(0,22)/thermal.htot));
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(1,2)/thermal.htot));
                        fprintf( ioQQQ, " Compton:");
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(0,19)/thermal.htot));
                        fprintf( ioQQQ, " FFHeatig");
                        fprintf(ioQQQ,PrintEfmt("%9.2e",thermal.heating(0,11)/thermal.htot));
                        fprintf( ioQQQ, "\n");
                }

                if( dense.lgElmtOn[ipHELIUM] )
                {
                        /* helium singlets and triplets relative to total helium gas phase density */
                        double fac = 1./dense.gas_phase[ipHELIUM];
                        fprintf( ioQQQ, " He singlet n " );
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe1s1S].Pop()*fac ));
                        /* singlet n=2 complex */
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2s1S].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2p1P].Pop()*fac ));
                        /* singlet n=3 complex */
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3s1S].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3p1P].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3d1D].Pop()*fac ));

                        fprintf( ioQQQ, " He tripl" );
                        /* triplet n=2 complex */
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2s3S].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", 
                                iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2p3P0].Pop()*fac+
                                iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2p3P1].Pop()*fac+
                                iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe2p3P2].Pop()*fac ));
                        /* triplet n=3 complex */
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3s3S].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3p3P].Pop()*fac ));
                        fprintf(ioQQQ,PrintEfmt("%9.2e", iso_sp[ipHE_LIKE][ipHELIUM].st[ipHe3d3D].Pop()*fac ));
                        fprintf( ioQQQ, "\n" );
                }
        }

        /* loop over iso sequences to see if any populations
         * and/or departure coefficients need to be printed */
        for( long ipISO = ipH_LIKE; ipISO < NISO; ipISO++ )
        {
                for( nelem=ipISO; nelem<LIMELM; ++nelem )
                {
                        if( dense.lgElmtOn[nelem] )
                        {
                                if( iso_sp[ipISO][nelem].lgPrtLevelPops )
                                {
                                        iso_prt_pops(ipISO, nelem, false);
                                }
                                if( iso_sp[ipISO][nelem].lgPrtDepartCoef )
                                {
                                        /* true says print departure coefficients
                                         * instead of populations. */
                                        iso_prt_pops(ipISO, nelem, true);
                                }
                        }
                }
        }

        /* >>chng 01 dec 08, move pressure to line before grains, after radiation properties */
        /* gas pressure, pressure due to incident radiation field, rad accel */
        fprintf( ioQQQ, " Pressure      NgasTgas");
        fprintf(ioQQQ,PrintEfmt("%9.2e", pressure.PresGasCurr/BOLTZMANN));
        fprintf( ioQQQ, " P(total)");
        fprintf(ioQQQ,PrintEfmt("%9.2e", pressure.PresTotlCurr));
        fprintf( ioQQQ, " P( gas )");
        fprintf(ioQQQ,PrintEfmt("%9.2e", pressure.PresGasCurr));
        fprintf( ioQQQ, " P(Radtn)");
        fprintf(ioQQQ,PrintEfmt("%9.2e", pressure.pres_radiation_lines_curr));
        fprintf( ioQQQ, " Rad accl");
        fprintf(ioQQQ,PrintEfmt("%9.2e", wind.AccelTotalOutward));
        fprintf( ioQQQ, " ForceMul");
        fprintf(ioQQQ,PrintEfmt("%9.2e", wind.fmul));
        fprintf( ioQQQ, "\n" );

        fprintf( ioQQQ , " Texc(La)     ");
        fprintf(ioQQQ,PrintEfmt("%9.2e",  hydro.TexcLya ));
        /* attenuated incident continuum */
        fprintf( ioQQQ , " T(I con)");
        fprintf(ioQQQ,PrintEfmt("%9.2e",  Tincid ));
        fprintf( ioQQQ , " T(D con)");
        fprintf(ioQQQ,PrintEfmt("%9.2e",  Tdiff ));
        fprintf( ioQQQ , " T(U tot)");
        fprintf(ioQQQ,PrintEfmt("%9.2e",  TconTot ));
        /* print the total radiation density expressed as an equivalent gas pressure */
        fprintf( ioQQQ , " nT (c+d)");
        fprintf(ioQQQ,PrintEfmt("%9.2e", Pcon_nT ));
        /* print the radiation to gas pressure */
        fprintf( ioQQQ , " Prad/Gas");
        fprintf(ioQQQ,PrintEfmt("%9.2e", pressure.pbeta ));
        /* magnetic to gas pressure ratio */
        fprintf( ioQQQ , " Pmag/Gas");
        fprintf(ioQQQ,PrintEfmt("%9.2e",  magnetic.pressure / pressure.PresGasCurr) );
        fprintf( ioQQQ, "\n" );

        if( gv.lgGrainPhysicsOn )
        {
                for( size_t nd=0; nd < gv.bin.size(); nd++ )
                {
                        /*  Change things so the quantum heated dust species are marked with an
                        *  asterisk just after the name (K Volk)
                        *  added QHMARK here and in the write statement */
                        chQHMark = (char)(( gv.bin[nd]->lgQHeat && gv.bin[nd]->lgUseQHeat ) ? '*' : ' ');
                        fprintf( ioQQQ, "%-12.12s%c  DustTemp",gv.bin[nd]->chDstLab, chQHMark);
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->tedust));
                        fprintf( ioQQQ, " Pot Volt");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->dstpot*EVRYD));
                        fprintf( ioQQQ, " Chrg (e)");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->AveDustZ));
                        fprintf( ioQQQ, " drf cm/s");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->DustDftVel));
                        fprintf( ioQQQ, " Heating:");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->GasHeatPhotoEl));
                        fprintf( ioQQQ, " Frac tot");
                        fprintf(ioQQQ,PrintEfmt("%9.2e", gv.bin[nd]->GasHeatPhotoEl/thermal.htot));
                        fprintf( ioQQQ, "\n" );
                }
        }
        /* >>chng 00 apr 20, moved save-out of quantum heating data to qheat(), by PvH */

        /* heavy element molecules */
        if( findspecieslocal("CO")->den > 0. )
        {
                fprintf( ioQQQ, " Molecules     CH/Ctot:");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("CH")->den/dense.gas_phase[ipCARBON]));
                fprintf( ioQQQ, " CH+/Ctot");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("CH+")->den/dense.gas_phase[ipCARBON]));
                fprintf( ioQQQ, " CO/Ctot:");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("CO")->den/dense.gas_phase[ipCARBON]));
                fprintf( ioQQQ, " CO+/Ctot");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("CO+")->den/dense.gas_phase[ipCARBON]));
                fprintf( ioQQQ, " H2O/Otot");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("H2O")->den/dense.gas_phase[ipOXYGEN]));
                fprintf( ioQQQ, " OH/Ototl");
                fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("OH")->den/dense.gas_phase[ipOXYGEN]));
                fprintf( ioQQQ, "\n");
        }

        /* information about the large H2 molecule - this just returns if not turned on */
        for( diatom_iter diatom = diatoms.begin(); diatom != diatoms.end(); ++diatom )
                (*diatom)->H2_Prt_Zone();

        /* Lithium, Beryllium */
        if( dense.lgElmtOn[ipLITHIUM] || dense.lgElmtOn[ipBERYLLIUM] || 
                (secondaries.csupra[ipHYDROGEN][0]>0.) )
        {
                fprintf( ioQQQ, " Lithium      " );
                for( i=0; i < 4; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[ipLITHIUM][i]/MAX2(1e-35,dense.gas_phase[ipLITHIUM]) ));
                }
                fprintf( ioQQQ, " Berylliu" );
                for( i=0; i < 5; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e",  dense.xIonDense[ipBERYLLIUM][i]/MAX2(1e-35,dense.gas_phase[ipBERYLLIUM])) );
                }

                /* print secondary ionization rate for atomic hydrogen */
                fprintf( ioQQQ, " sec ion:" );
                fprintf(ioQQQ,PrintEfmt("%9.2e", secondaries.csupra[ipHYDROGEN][0]) );
                fprintf( ioQQQ, "\n" );

                /* option to print heating due to these stages*/
                if( prt.lgPrintHeating )
                {
                        fprintf( ioQQQ, "              " );
                        for( i=0; i < 3; i++ )
                        {
                                fprintf(ioQQQ,PrintEfmt("%9.2e",  thermal.heating(ipLITHIUM,i)/ thermal.htot) );
                        }
                        fprintf( ioQQQ, "                    " );

                        for( i=0; i < 4; i++ )
                        {
                                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(ipBERYLLIUM,i)/thermal.htot ));
                        }
                        fprintf( ioQQQ, "\n" );
                }
        }

        /* Boron */
        if( dense.lgElmtOn[ipBORON] )
        {
                fprintf( ioQQQ, " Boron        " );
                for( i=0; i < 6; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[ipBORON][i]/MAX2(1e-35,dense.gas_phase[ipBORON]) ));
                }
                fprintf( ioQQQ, "\n" );

                /* option to print heating*/
                if( prt.lgPrintHeating )
                { 
                        fprintf( ioQQQ, "              " );
                        for( i=0; i < 5; i++ )
                        {
                                fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(ipBORON,i)/thermal.htot ));
                        }
                        fprintf( ioQQQ, "\n" );
                }
        }

        /* Carbon */
        fprintf( ioQQQ, " Carbon       " );
        for( i=0; i < 7; i++ )
        {
                fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[ipCARBON][i]/SDIV(dense.gas_phase[ipCARBON])) );
        }
        /* some molecules trail the line */
        fprintf( ioQQQ, " H2O+/O  " );
        fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("H2O+")->den/MAX2(1e-35,dense.gas_phase[ipOXYGEN]) ));
        fprintf( ioQQQ, " OH+/Otot" );
        fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("OH+")->den/ MAX2(1e-35,dense.gas_phase[ipOXYGEN]) ));
        /* print extra heating, normally zero */
        fprintf( ioQQQ, " Hex(tot)" );
        fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(0,20) ));
        fprintf( ioQQQ, "\n" );

        /* option to print heating*/
        if( prt.lgPrintHeating )
        {
                fprintf( ioQQQ, "              " );
                for( i=0; i < ipCARBON+1; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(ipCARBON,i)/ thermal.htot) );
                }
                fprintf( ioQQQ, "\n" );
        }

        /* Nitrogen */
        fprintf( ioQQQ, " Nitrogen     " );
        for( i=1; i <= 8; i++ )
        {
                fprintf(ioQQQ,PrintEfmt("%9.2e",dense.xIonDense[ipNITROGEN][i-1]/ SDIV(dense.gas_phase[ipNITROGEN]) ));
        }
        fprintf( ioQQQ, " O2/Ototl" );
        fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("O2")->den/MAX2(1e-35,dense.gas_phase[ipOXYGEN])));
        fprintf( ioQQQ, " O2+/Otot" );
        fprintf(ioQQQ,PrintEfmt("%9.2e", findspecieslocal("O2+")->den/ MAX2(1e-35,dense.gas_phase[ipOXYGEN]) ));
        fprintf( ioQQQ, "\n" );

        /* option to print heating*/
        if( prt.lgPrintHeating )
        {
                fprintf( ioQQQ, "              " );
                for( i=0; i < ipNITROGEN+1; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(ipNITROGEN,i)/ thermal.htot ));
                }
                fprintf( ioQQQ, "\n" );
        }

#       if 0
        /* Oxygen */
        fprintf( ioQQQ, " Oxygen       " );
        for( i=1; i <= 9; i++ )
        {
                fprintf(ioQQQ,PrintEfmt("%9.2e",dense.xIonDense[ipOXYGEN][i-1]/ SDIV(dense.gas_phase[ipOXYGEN]) ));
        }
        fprintf( ioQQQ, "\n" );

        /* option to print heating*/
        if( prt.lgPrintHeating )
        {
                fprintf( ioQQQ, "              " );
                for( i=0; i < ipOXYGEN+1; i++ )
                {
                        fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(ipOXYGEN,i)/ thermal.htot ));
                }
                fprintf( ioQQQ, "\n" );
        }
#       endif

        /* now print rest of elements inside loops */
        /* fluorine through Magnesium */
        for( nelem=ipOXYGEN; nelem < ipALUMINIUM; ++nelem )
        {
                if( dense.lgElmtOn[nelem] )
                {
                        /* print the element name and amount of shift */
                        fprintf( ioQQQ, " %10.10s   ", elementnames.chElementName[nelem]);

                        for( i=0; i < nelem+2; i++ )
                        {
                                fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[nelem][i]/dense.gas_phase[nelem] ));
                        }
                        fprintf( ioQQQ, "\n" );

                        /* print heating but only if needed */
                        if( prt.lgPrintHeating )
                        {
                                fprintf( ioQQQ, "              " );
                                for( i=0; i < nelem+1; i++ )
                                {
                                        fprintf(ioQQQ,PrintEfmt("%9.2e", thermal.heating(nelem,i)/thermal.htot ));
                                }
                                fprintf( ioQQQ, "\n" );
                        }
                }
        }

        /* Aluminium through Zinc */
        for( nelem=ipALUMINIUM; nelem < LIMELM; ++nelem )
        {
                if( dense.lgElmtOn[nelem] )
                {
                        /* number of ionization stages to print across the page */
                        /*@-redef@*/
                        enum {LINE=13};
                        /*@+redef@*/
                        ishift = MAX2(0,dense.IonHigh[nelem]-LINE+1);

                        /* print the element name and amount of shift */
                        fprintf( ioQQQ, " %10.10s%2ld ", elementnames.chElementName[nelem],ishift );

                        for( i=0; i < LINE; i++ )
                        {
                                fprintf(ioQQQ,PrintEfmt("%9.2e", dense.xIonDense[nelem][i+ishift]/dense.gas_phase[nelem]) );
                        }
                        fprintf( ioQQQ, "\n" );

                        /* print heating but only if needed */
                        if( prt.lgPrintHeating )
                        {
                                fprintf( ioQQQ, "              " );
                                for( i=0; i < LINE; i++ )
                                {
                                        fprintf(ioQQQ,
                                                PrintEfmt("%9.2e", thermal.heating(nelem,i+ishift)/thermal.htot ));
                                }
                                fprintf( ioQQQ, "\n" );
                        }
                }
        }

        return;
}