#include <dense.h>
Collaboration diagram for t_dense:
Definition at line 26 of file dense.h.
| t_dense::t_dense | ( | ) | [inline] |
this is lower limit to abundance of element that will be include in the calculation, default is zero, set with command ELEMENT LIMIT OFF XXX command
Definition at line 124 of file dense.h.
Referenced by InitDefaultsPreparse().
vector of atomic weights for all elements, set in zerologic
Definition at line 69 of file dense.h.
Referenced by collision_strength_VF01(), CS_l_mixing_PS64(), iso_collide(), iso_satellite_update(), iso_state_lifetime(), mie_read_form(), newspecies(), pah1_fun(), rfield_opac_malloc(), ritoa(), t_dense(), and velset().
| double t_dense::cdsqte |
cdsqte is eden/sqrte times 8.629e-6 - this multiplies the collision strength to produce the deexcitation rate coefficient, s-1 8.629e-6 is COLL_CONST
Definition at line 211 of file dense.h.
Referenced by atom_level2(), atom_level3(), atom_pop2(), atom_pop3(), atom_pop5(), AtomSeqBeryllium(), ConvRate2CS(), CoolCalc(), CoolCarb(), CoolOxyg(), CoolSili(), emit_frac(), H21_cm_pops(), LineConvRate2CS(), lines_lv1_k_zn(), lines_lv1_li_ne(), and oi_level_pops().
| char t_dense::chDenseLaw[5] |
label describing the density law for current calculation 'DLW2' is dense_tabden interpolated table
Definition at line 143 of file dense.h.
Referenced by AgeCheck(), ConvFail(), InitDefaultsPreparse(), lgConvPres(), ParseConstant(), ParseDLaw(), ParseDynaTime(), ParseDynaWind(), ParseFluc(), ParseGlobule(), ParseHDEN(), ParseTLaw(), PresTotCurrent(), and ZoneStart().
| double t_dense::density_low_limit |
lowest allowed density for any ion = if density falls below this then set to zero in ion_trim
Definition at line 174 of file dense.h.
Referenced by InitCoreload(), ion_trim(), and RT_tau_inc().
| double t_dense::DensityLaw[10] |
parameters set by the dlaw command, used by dense_fabden (maybe)
Definition at line 150 of file dense.h.
Referenced by dense_fabden().
parameters dealing with hydrogen density scaling as power of radius DensityPower is power
Definition at line 215 of file dense.h.
Referenced by lgConvPres(), and ParseHDEN().
| double t_dense::eden |
electron density, units cm-3
Definition at line 167 of file dense.h.
Referenced by AGN_Hemis(), atmdat_DielSupres(), atmol_popsolve(), atom_level3(), cdEDEN_last(), CO_update_species_cache(), collision_strength_VF01(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvIoniz(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolCarb(), CoolChlo(), CoolEvaluate(), CoolIron(), CoolNick(), CoolSili(), CoolSulf(), CS_l_mixing_PS64(), CS_l_mixing_VF01(), CS_ThermAve_PR78(), da(), DoSatelliteLines(), DumpLine(), Fe2_cooling(), FeIILevelPops(), GetLineRec(), GrainDrift(), GrainDrive(), GrainElecRecomb1(), H2_LevelPops(), H2_X_coll_rate_evaluate(), hmole(), hmole_reactions(), HydroLevel(), HydroT2Low(), HyperfineCreate(), ion_recombAGN(), IonCalci(), IonPotas(), iso_collapsed_bnl_set(), iso_continuum_lower(), iso_cool(), iso_ionize_recombine(), iso_satellite_update(), IterRestart(), lgCheckAsserts(), lgConvEden(), lines(), lines_continuum(), lines_hydro(), lines_lv1_k_zn(), lines_lv1_li_ne(), lines_lv1_na_ar(), MeanInc(), OpacityAddTotal(), PressureChange(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), PrtZone(), Punch_Line_RT(), radius_increment(), RT_diffuse(), RT_line_static(), RT_LineWidth(), RT_OTS(), RT_stark(), RT_tau_inc(), RT_tau_init(), tauff(), tfidle(), and ZoneStart().
electron density, units cm-3, floating point version for compatibility in CO_mole
Definition at line 170 of file dense.h.
Referenced by CO_Init(), and CO_update_species_cache().
| double t_dense::eden_from_metals |
fraction of electron density due to ions rather than molecules and grains
Definition at line 200 of file dense.h.
Referenced by ConvEdenIoniz().
extra electron density, set with eden command
Definition at line 183 of file dense.h.
Referenced by eden_sum().
| double t_dense::EdenHCorr |
EdenHCorr is eden + hi * 1.7e-4, includes correction for H atom collisions, units cm-3
Definition at line 190 of file dense.h.
Referenced by CoolOxyg(), HydroLevel(), HydroT2Low(), ion_collis(), iso_collide(), iso_cool(), iso_ionize_recombine(), iso_level(), IterRestart(), lines_helium(), and PrtHydroTrace1a().
| double t_dense::EdenHontoHCorr |
above may not be correct for H0 onto H0, being homonuclear - this is parallel version for H0 - H0 collisions
Definition at line 194 of file dense.h.
Referenced by HydroLevel(), HydroT2Low(), iso_cool(), iso_level(), and PrtHydroTrace1a().
EdenSet electron density set with set eden command
Definition at line 180 of file dense.h.
Referenced by ParseSet().
| double t_dense::edensqte |
| double t_dense::EdenTrue |
this is the true eden as set in eden_sum, we will try to converge eden to this
Definition at line 197 of file dense.h.
Referenced by ConvBase(), ConvEdenIoniz(), ConvFail(), ConvIoniz(), CoolEvaluate(), eden_sum(), IterRestart(), lgConvEden(), lines_grains(), and RT_OTS().
Definition at line 230 of file dense.h.
Referenced by InitDefaultsPreparse(), lgConvPres(), and ParseFluc().
parameters for the density fluctuations command
Definition at line 227 of file dense.h.
Referenced by InitDefaultsPreparse(), lgConvPres(), ParseFluc(), and radius_first().
frad is log radius in cm, fhden is log hden
Definition at line 157 of file dense.h.
Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().
dense.gas_phase is the total gas phase abundances, including anything within molecules, but not including grains
Definition at line 66 of file dense.h.
Referenced by AbundancesPrt(), ChemImportance(), CO_drive(), ContRate(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), DynaIonize(), DynaPresChngFactor(), DynaPrtZone(), DynaPunch(), DynaPunchTimeDep(), DynaSaveLast(), Fe2_cooling(), GrainChargeTemp(), GrainDrive(), GrainUpdateRadius1(), GrnStdDpth(), GrnVryDpth(), H2_LevelPops(), hmole(), ion_solver(), ion_trim(), IonAlumi(), IonBeryl(), IonBoron(), IonCarbo(), IonHelium(), IonIron(), IonMagne(), IonNeon(), IonNitro(), IonOxyge(), IonSilic(), IonSodiu(), IterRestart(), lgConvPres(), lgIonizConverg(), lgMolecAver(), MeanInc(), ParseDLaw(), ParseFluc(), ParseGlobule(), ParseHDEN(), PressureChange(), PresTotCurrent(), PrtComment(), PrtZone(), punch_opacity(), PunchDo(), radius_first(), and radius_next().
this is scale factor that multiplies the correction factor for neutral hydrogen collisions, def 1, changed with set command
Definition at line 99 of file dense.h.
Referenced by ParseSet().
| long int t_dense::IonHigh[LIMELM+1] |
Definition at line 108 of file dense.h.
Referenced by ion_collis(), ion_photo(), ion_recomb(), ion_recombAGN(), ion_solver(), ion_trim(), IonIron(), IterRestart(), lines_general(), PrtLinePres(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), and RT_tau_inc().
| long int t_dense::IonLow[LIMELM+1] |
indices for lowest stage of ionization of the elements on C scale, lowest is 0 for atom, -1 if element turned off, the first stage of ionization with positive abundance is [IonLow] where 0 is the atom, the highest stage of ionization with positive abundance is [IonHigh], NB NB so loops should be ion=IonLow, ion<=IonHigh
Definition at line 107 of file dense.h.
Referenced by CO_drive(), ion_collis(), ion_photo(), ion_recomb(), ion_recombAGN(), ion_solver(), ion_trim(), IonIron(), IonMagne(), IonNitro(), IonOxyge(), IonSulph(), IterRestart(), and lines_general().
| bool t_dense::lgAsChoose[LIMELM][LIMELM] |
options on set atomic data command
Definition at line 153 of file dense.h.
Referenced by InitDefaultsPreparse(), and ParseSet().
| bool t_dense::lgCSChoose[LIMELM][LIMELM] |
| bool t_dense::lgDenFlucOn |
set true when density fluctuations are turned on
Definition at line 220 of file dense.h.
Referenced by AbundancesSet(), InitDefaultsPreparse(), ParseFluc(), and PrtZone().
set false when fluctuations are over col den rather than radius, set with column options on fluctuations command
Definition at line 224 of file dense.h.
Referenced by InitDefaultsPreparse(), lgConvPres(), and ParseFluc().
Definition at line 147 of file dense.h.
Referenced by ConvInitSolution(), InitDefaultsPreparse(), lgConvPres(), and ParseConstant().
| bool t_dense::lgDLWDepth |
lg is true if depth, false if radius to be used
Definition at line 164 of file dense.h.
Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().
| bool t_dense::lgEdenBad |
flags set when bad electron density is detected
Definition at line 203 of file dense.h.
Referenced by ConvInitSolution(), and PrtComment().
| bool t_dense::lgElmtOn[LIMELM] |
array of logical variables saying whether an element is enable (true) or disabled (false). It is set totally true in zero and is set false with the "element off" command. In SetAbundances if can be reset so that an element that was disabled on the first model in a core load is not later enabled
Definition at line 131 of file dense.h.
Referenced by AbundancesPrt(), AbundancesSet(), Badnell_rec_init(), ChemImportance(), CO_drive(), ContCreatePointers(), ContRate(), ConvBase(), ConvIterCheck(), CoolNitr(), DoSatelliteLines(), GetStandardHeLines(), GrainChrgTransferRates(), GrainCollHeating(), GrainElecRecomb1(), GrainRateDr(), HeCollidSetup(), HighestIonStage(), InitCoreload(), IonAlumi(), IonArgon(), IonBeryl(), IonBoron(), IonCalci(), IonCarbo(), IonChlor(), IonChrom(), IonCobal(), IonCoppe(), IonFluor(), IonHelium(), IonIron(), IonLithi(), IonMagne(), IonManga(), IonNeon(), IonNicke(), IonNitro(), IonOxyge(), IonPhosi(), IonPotas(), IonScand(), IonSilic(), IonSodiu(), IonSulph(), IonTitan(), IonVanad(), IonZinc(), iso_allocate(), iso_assign_quantum_numbers(), iso_cool(), iso_create(), iso_recomb_malloc(), iso_recomb_setup(), iso_satellite(), iso_satellite_update(), iso_zero(), IterRestart(), lgCheckAsserts(), lgIonizConverg(), lines_helium(), lines_hydro(), lines_lv1_k_zn(), MeanIonRadius(), MeanIonVolume(), OpacityAddTotal(), OpacityCreateAll(), OpacityValenceRescale(), ParseCompile(), PresTotCurrent(), prt_smooth_predictions(), PrtAllTau(), PrtColumns(), PrtComment(), PrtMeanIon(), prtmet(), PrtZone(), PunchLineData(), PunchLineStuff(), radius_increment(), radius_next(), RT_line_all(), RT_OTS(), RT_stark(), RT_tau_init(), RT_tau_reset(), SanityCheckBegin(), state_get_put(), and UpdateRecomZ0().
| bool t_dense::lgSetIoniz[LIMELM] |
will we solve for ionization (false) or specify it with element ionization cmnd true
Definition at line 134 of file dense.h.
Referenced by InitCoreload(), ion_solver(), ion_trim(), IonHelium(), and PresTotCurrent().
| long int t_dense::nvals |
number of values in above table
Definition at line 161 of file dense.h.
Referenced by dense_tabden(), ParseDLaw(), and ParseTLaw().
| long int t_dense::nzEdenBad |
zone where bad electron density was detected
Definition at line 177 of file dense.h.
Referenced by ConvInitSolution(), and PrtComment().
total number of particles per cubic centimeter
Definition at line 86 of file dense.h.
Referenced by ConvInitSolution(), and radius_first().
dense.SetIoniz the ionization fractions that are set when lgSetIoniz set true, gas phase abundance is this times total aabundance Ionization fraction for [nelem][ion]
Definition at line 139 of file dense.h.
Referenced by ion_solver(), and IonHelium().
| double t_dense::SqrtEden |
square root of electron density, set in tfidle
Definition at line 186 of file dense.h.
Referenced by GrainDrift().
at the moment 12CO, 13CO, and H2 are xIonDense[LIMELM][2], [L+1][3] and [L+2][1]
Definition at line 119 of file dense.h.
Referenced by AGN_Hemis(), atmol_popsolve(), atom_level2(), atom_level3(), atom_oi_calc(), t_fe2ovr_la::atoms_fe2ovr(), AtomSeqBeryllium(), AtomSeqBoron(), ChargeTransferUpdate(), ChargTranSumHeat(), CO_drive(), CO_Init(), ConvInitSolution(), ConvTempEdenIoniz(), CoolAlum(), CoolArgo(), CoolCalc(), CoolCarb(), CoolChlo(), CoolChro(), CoolDima(), CoolEvaluate(), CoolIron(), CoolMagn(), CoolNeon(), CoolNick(), CoolOxyg(), CoolPhos(), CoolScan(), CoolSili(), CoolSodi(), CoolSulf(), CoolTita(), CoolVana(), DoSatelliteLines(), eden_sum(), Fe11Lev5(), Fe13Lev5(), Fe2_cooling(), Fe3Lev14(), Fe4Lev12(), FeII_RT_Out(), FeIILevelPops(), FeIIPunPop(), FeIISumBand(), GetLineRec(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainElecRecomb1(), GrainMakeDiffuse(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), H2_X_coll_rate_evaluate(), HeatSum(), highen(), HighestIonStage(), hmole(), HydroRenorm(), HyperfineCreate(), ion_recomb(), ion_solver(), ion_trim(), IonAlumi(), IonBeryl(), IonBoron(), IonCarbo(), IonHelium(), IonIron(), IonMagne(), IonNeon(), IonNitro(), IonOxyge(), IonSilic(), IonSodiu(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_ionize_recombine(), iso_satellite_update(), lgIonizConverg(), lgMolecAver(), ligbar(), lines(), lines_continuum(), lines_general(), lines_hydro(), lines_lv1_k_zn(), lines_lv1_li_ne(), lines_lv1_na_ar(), lines_molecules(), MakeCS(), MeanInc(), OpacityAdd1Element(), OpacityAddTotal(), PressureChange(), PresTotCurrent(), PrtLinePres(), PrtZone(), PunchLineStuff(), PunchSpecial(), radius_first(), radius_increment(), radius_next(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_line_static(), RT_OTS(), RT_tau_inc(), and UpdateRecomZ0().
xMassDensity grams per cc
Definition at line 79 of file dense.h.
Referenced by ConvInitSolution(), DynaIonize(), DynaPresChngFactor(), DynaPrtZone(), lgConvPres(), and Magnetic_evaluate().
WJH: fiducial value that corresponds to hden set in init file, this is used for setting the mass-flux in dynamic models
Definition at line 83 of file dense.h.
Referenced by DynaFlux().
dense.xMolecules density of elements locked in molecules, this is included in gas_phase
Definition at line 73 of file dense.h.
Referenced by hmole_step(), ion_solver(), and IterRestart().
total number of nuclei, set in PressureTotal
Definition at line 92 of file dense.h.
Referenced by iso_continuum_lower().
1.4.7